RSCABS-package: Runs the Rao-Scott adjusted Cochran-Armitage trend test by...

Description Details Note Author(s) References Examples

Description

This package contains all of the functions necessary to run the RSCABS analysis through the GUI or command line on histopathological data.

Details

  • Package:RSCABS

  • Type: Package

  • Version: 0.01

  • Date: 2016-04-21

  • License: CC0

Note

The command line version uses runRSCABS (see example below). Use the command Histopath to call the GUI version.

Author(s)

Joe Swintek <swintek.joe@epa.gov> as author and Kevin Flynn as a tester.

Maintainer: Joe Swintek <swintek.joe@epa.gov>

References

Green, John W. and Springer, Timothy A. and Saulnier, Amy N. and Swintek, Joe, (2014) Statistical analysis of histopathological endpoints. Environmental Toxicology and Chemistry, 33(5), 1108-1116

Examples

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	#Take the subset corresponding to F0-females of 16 weeks of age
	exampleHistData.sub<-exampleHistData[which(exampleHistData$Generation=='F2' & 
		exampleHistData$Genotypic_Sex=='Female' & exampleHistData$Age=='16_wk' ),  ]
	#Run RSCABS	
	exampleResults<-runRSCABS(exampleHistData.sub,'Treatment','Replicate',test.type='RS')
	


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