This package contains all of the functions necessary to run the RSCABS analysis through the GUI or command line on histopathological data.
The command line version uses
runRSCABS (see example below). Use the command
Histopath to call the GUI version.
Joe Swintek <[email protected]> as author and Kevin Flynn as a tester.
Maintainer: Joe Swintek <[email protected]>
Green, John W. and Springer, Timothy A. and Saulnier, Amy N. and Swintek, Joe, (2014) Statistical analysis of histopathological endpoints. Environmental Toxicology and Chemistry, 33(5), 1108-1116
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#Take the subset corresponding to F0-females of 16 weeks of age exampleHistData.sub<-exampleHistData[which(exampleHistData$Generation=='F2' & exampleHistData$Genotypic_Sex=='Female' & exampleHistData$Age=='16_wk' ), ] #Run RSCABS exampleResults<-runRSCABS(exampleHistData.sub,'Treatment','Replicate',test.type='RS')
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