RSCABS-package: Runs the Rao-Scott adjusted Cochran-Armitage trend test by...

In RSCABS: Rao-Scott Cochran-Armitage by Slices Trend Test

Description

This package contains all of the functions necessary to run the RSCABS analysis through the GUI or command line on histopathological data.

Details

• Package:RSCABS

• Type: Package

• Version: 0.01

• Date: 2016-04-21

• License: CC0

Note

The command line version uses runRSCABS (see example below). Use the command Histopath to call the GUI version.

Author(s)

Joe Swintek <[e-mail]> as author and Kevin Flynn as a tester.

Maintainer: Joe Swintek <[e-mail]>

References

Green, John W. and Springer, Timothy A. and Saulnier, Amy N. and Swintek, Joe, (2014) Statistical analysis of histopathological endpoints. Environmental Toxicology and Chemistry, 33(5), 1108-1116

Examples

## Not run: 
#Take the subset corresponding to F0-females of 16 weeks of age
## Not run: 
data(exampleHistData)
exampleHistData.sub<-exampleHistData[which(exampleHistData$Generation=='F2' & 
	exampleHistData$Genotypic_Sex=='Female' & exampleHistData$Age=='16_wk' ),  ]
#Run RSCABS	
exampleResults<-runRSCABS(exampleHistData.sub,'Treatment','Replicate',test.type='RS')
	
## End(Not run)
	

RSCABS documentation built on May 1, 2020, 9:06 a.m.