Scelestial: Steiner Tree Based Single-Cell Lineage Tree Inference

as.mutation.matrix | Conversion of ten-state sequencing matrix to 0/1-mutation... |

as.ten.state.matrix | Conversion of 0/1 matrix to 10-state matrix |

as.ten.state.matrix.from.node.seq | Generates 10-state sequence matrix from name/10-char string... |

distance.matrix.scelestial | Calculates distance matrix for result of scelestial |

distance.matrix.tree | Calculates distance matrix for a nodes on a tree. |

distance.matrix.true.tree | Calculates distance matrix for a synthetized data |

dot-scelestial | Internal function for running scelestial algorithm. |

dot-synthesis | Internal function for generating synthetic single-cell data... |

Li | Bladder invasive single cell tumor dataset |

my.dfs | Runs DFS on tree and calculates parent of each node as well... |

my.general.dfs | Running depth first search on a tree and calling functions on... |

read.sequence.table | Read mutation table |

RScelestial | RScelestial: An R wrapper for scelestial algorithm for... |

scelestial | Infer the single-cell phylogenetic tree |

synthesis | Synthesize single-cell data through tumor simulation |

tree.plot | Plotting the tree |

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