# distance.matrix.scelestial: Calculates distance matrix for result of scelestial In RScelestial: Scelestial: Steiner Tree Based Single-Cell Lineage Tree Inference

## Description

Calculates distance matrix for result of scelestial

## Usage

 `1` ```distance.matrix.scelestial(SP, normalize = TRUE) ```

## Arguments

 `SP` Output of scelestial function `normalize` If true, sum of all elements of resulting table is added up to one.

## Value

The distance matrix

## Examples

 ``` 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28``` ```## Synthesise an evolution S = synthesis(10, 5, 20, seed=7) ## Run Scelestial SC = scelestial(as.ten.state.matrix(S\$seqeunce)) ## Calculate the distance matrix distance.matrix.scelestial(SC) # C1 C10 C2 C3 C4 # C1 0.000000000 0.003512891 0.015222451 0.014051472 0.008196692 # C10 0.003512891 0.000000000 0.011709560 0.010538580 0.004683800 # C2 0.015222451 0.011709560 0.000000000 0.010538627 0.007025759 # C3 0.014051472 0.010538580 0.010538627 0.000000000 0.005854780 # C4 0.008196692 0.004683800 0.007025759 0.005854780 0.000000000 # C5 0.011709560 0.008196668 0.003512891 0.007025736 0.003512868 # C6 0.023419213 0.019906322 0.019906368 0.009367741 0.015222521 # C7 0.018735342 0.015222451 0.015222498 0.004683871 0.010538651 # C8 0.015222474 0.011709583 0.014051542 0.012880562 0.007025783 # C9 0.010538627 0.007025736 0.009367695 0.008196715 0.002341935 # C5 C6 C7 C8 C9 # C1 0.011709560 0.023419213 0.018735342 0.015222474 0.010538627 # C10 0.008196668 0.019906322 0.015222451 0.011709583 0.007025736 # C2 0.003512891 0.019906368 0.015222498 0.014051542 0.009367695 # C3 0.007025736 0.009367741 0.004683871 0.012880562 0.008196715 # C4 0.003512868 0.015222521 0.010538651 0.007025783 0.002341935 # C5 0.000000000 0.016393477 0.011709606 0.010538651 0.005854803 # C6 0.016393477 0.000000000 0.004683871 0.022248304 0.017564457 # C7 0.011709606 0.004683871 0.000000000 0.017564433 0.012880586 # C8 0.010538651 0.022248304 0.017564433 0.000000000 0.004683847 # C9 0.005854803 0.017564457 0.012880586 0.004683847 0.000000000 ```

RScelestial documentation built on March 24, 2020, 1:08 a.m.