RVAideMemoire: Diverse Basic Statistical and Graphical Functions

Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.

AuthorMaxime Herv
Date of publication2017-03-25 09:59:15 UTC
MaintainerMaxime Herv <mx.herve@gmail.com>
LicenseGPL-2
Version0.9-64

View on CRAN

Man pages

adonis.II: Type II permutational MANOVA using distance matrices

Anova.clm: Anova Tables for Cumulative Link (Mixed) Models

back.lsmeans: Back-transformation of LSMeans

bootstrap: Bootstrap

byf.hist: Histogram for factor levels

byf.mqqnorm: QQ-plot for factor levels

byf.mshapiro: Shapiro-Wilk test for factor levels

byf.qqnorm: QQ-plot for factor levels

byf.shapiro: Shapiro-Wilk test for factor levels

CDA.cv: Cross validation

CDA.test: Significance test for CDA

cdf.discrete: Cumulative Distribution Function of a known discrete...

chisq.bin.exp: Expected counts for comparison of response probabilities to...

chisq.bintest: Pearson's Chi-squared test for binary variables

chisq.exp: Expected counts for comparison of proportions to given values

chisq.multcomp: Pairwise comparisons after a chi-squared goodness-of-fit test

chisq.theo.bintest: Pearson's Chi-squared test for comparison of response...

chisq.theo.multcomp: Pairwise comparisons after a chi-squared test for given...

cochran.qtest: Cochran's Q test

cond.multinom: Condition number of the Hessian matrix of a multinomial...

coord.proj: Coordinates of projected points

cor.2comp: Comparison of 2 Pearson's linear correlation coefficients

cor.conf: Equality of a Pearson's linear correlation coefficient to a...

cor.multcomp: Comparison of several Pearson's linear correlation...

cov.test: Significance test for the covariance between two datasets

cox.resid: Martingale residuals of a Cox model

cramer: Cramer's association coefficient

cramer.test: Cramer's association coefficient

cv: Coefficient of variation

CvM.test: Two-sample Cramer-von Mises test

dendro.gp: Dendrogram and number of groups to be chosen

deprecated: Deprecated functions in RVAideMemoire package

dummy: Dummy responses

dunn.test: Dunn's test

fisher.bintest: Fisher's exact test for binary variables

fisher.multcomp: Pairwise comparisons using Fisher's exact test

fp.test: Fligner-Policello test

G.bintest: G-test for binary variables

G.multcomp: Pairwise comparisons after a G-test

GPA.test: Significance test for GPA

G.test: G-test

G.theo.multcomp: Pairwise comparisons after a G-test for given probabilities

ind.contrib: Individual contributions in regression

least.rect: Least rectangles linear regression

loc.slp: Slope of a hand-defined line

logis.fit: Graphical adujstment of a simple binary logistic regression...

logis.noise: Creating a nls model for logistic regression from fitted...

mod: Mode

mood.medtest: Mood's median test

mqqnorm: Multivariate normality QQ-Plot

mshapiro.test: Shapiro-Wilk multivariate normality test

multinomial.multcomp: Pairwise comparisons after an exact multinomial test

multinomial.test: Exact multinomial test

multinomial.theo.multcomp: Pairwise comparisons after an exact multinomial test for...

multtest.cor: Univariate correlation test for multiple variables

multtest.gp: Univariate comparison of groups for multiple variables

MVA.anova: Type II permutational test for constrained multivariate...

MVA.biplot: Biplot of multivariate analyses

MVA.cmv: Cross model validation

MVA.cor: Correlations of multivariate analyses

MVA.corplot: Correlation circle of multivariate analyses

MVA.cv: Cross validation

MVA.load: Loadings of multivariate analyses

MVA.loadplot: Loading plot of multivariate analyses

MVA.pairplot: Paired plot of multivariate analyses

MVA.plot: Plotting of multivariate analyses

MVA.scoreplot: Score plot of multivariate analyses

MVA.scores: Scores of multivariate analyses

MVA.synt: Synthesis quality of multivariate analyses

MVA.test: Significance test based on cross (model) validation

MVA.trajplot: Trajectory plot of multivariate analyses

ord.rw: Re-computation of an ordination using given row weights

OR.multinom: Odds-ratio (multinomial regression)

overdisp.glmer: Estimation of overdispersion with 'glmer' models

pairwise.CDA.test: Pairwise comparisons for CDA

pairwise.factorfit: Pairwise comparisons of groups displayed on a factorial map

pairwise.G.test: Pairwise comparisons for proportions using G-tests

pairwise.mood.medtest: Pairwise Mood's median tests

pairwise.MVA.test: Pairwise permutational tests based on cross (model)...

pairwise.perm.manova: Pairwise permutational MANOVAs

pairwise.perm.t.test: Pairwise permutational t tests

pairwise.perm.var.test: Pairwise permutational F tests

pairwise.to.groups: Letter summary of similarities and differences

pairwise.var.test: Pairwise F tests

pcor: (Semi-)Partial correlation

pcor.test: Tests for (semi-)partial association/correlation between...

perm.anova: Permutational Analysis of Variance

perm.bartlett.test: Permutational Bartlett's test of homogeneity of variances

perm.cor.test: Permutational Pearson's correlation test

perm.t.test: Permutational Student's t-test

perm.var.test: Permutational F test to compare two variances

plotresid: Simple analysis of model residuals

plotsurvivors: Survivor curve

PLSDA.VIP: Variable Importance in the Projection (VIP)

predict.CDA.cv: Predict method for cross-validated CDA submodels

predict.coadisc: Predict method for CDA

predict.MVA.cv: Predict method for cross-validated submodels

prop.bin.multcomp: Pairwise comparisons after a test for given probabilities

prop.multcomp: Pairwise comparisons after a test for given proportions

prop.multinom: Proportions and standard errors

prop.multinom.test: Wald tests for comparison of proportions

rating.lsmeans: LSMeans for Cumulative Link (Mixed) Models

rating.prob: Observed rating frequencies

reg.ci: Confidence intervals of a simple linear regression

RVAideMemoire-package: Diverse Basic Statistical and Graphical Functions

scat.cr: "Correlation" of variables to axes in MCA or mix analyses

se: Standard error

seq2: Sequence generation

spearman.ci: Confidence interval of a Spearman's rank correlation...

spearman.cor.multcomp: Comparison of several Spearman's rank correlation...

splitf: Divide into groups respecting relative proportions

stand: Standardization of a data frame based on another data frame

test.multinom: Significance tests of coefficients (multinomial regression)

to.dudi: Synthesis quality of multivariate analyses

user.cont: User defined contrasts for LSMeans

wald.ptheo.multinom.test: Wald tests for comparison of proportions to theoretical...

wald.ptheo.test: Wald test for comparison of a proportion to a theoretical...

wilcox.paired.multcomp: Non parametric pairwise comparisons for paired data

wilcox.signtest: Wilcoxon sign test

wmean: Weighted arithmetic mean

Functions

adonis.II Man page
Anova.clm Man page
Anova.clmm Man page
back.lsmeans Man page
bootstrap Man page
byf.hist Man page
byf.mqqnorm Man page
byf.mshapiro Man page
byf.normhist Man page
byf.qqnorm Man page
byf.shapiro Man page
CDA.cv Man page
CDA.test Man page
cdf.discrete Man page
chisq.bin.exp Man page
chisq.bintest Man page
chisq.exp Man page
chisq.multcomp Man page
chisq.theo.bintest Man page
chisq.theo.multcomp Man page
cochran.qtest Man page
cond.multinom Man page
coord.proj Man page
cor.2comp Man page
cor.conf Man page
cor.multcomp Man page
cor.sparse Man page
cov.test Man page
cox.resid Man page
cramer Man page
cramer.test Man page
cv Man page
CvM.test Man page
DA.confusion Man page
DA.valid Man page
DA.var Man page
dendro.gp Man page
dummy Man page
dunn.test Man page
fc.multcomp Man page
fisher.bintest Man page
fisher.multcomp Man page
fp.test Man page
fp.test.default Man page
fp.test.formula Man page
friedman.rating.test Man page
G.bintest Man page
G.multcomp Man page
GPA.test Man page
G.test Man page
G.theo.multcomp Man page
ind.contrib Man page
kruskal.rating.test Man page
least.rect Man page
loc.slp Man page
logis.fit Man page
logis.noise Man page
mod Man page
mood.medtest Man page
mood.medtest.default Man page
mood.medtest.formula Man page
mqqnorm Man page
mshapiro.test Man page
multinomial.multcomp Man page
multinomial.test Man page
multinomial.theo.multcomp Man page
multtest.cor Man page
multtest.gp Man page
MVA.anova Man page
MVA.biplot Man page
MVA.cmv Man page
MVA.cor Man page
MVA.corplot Man page
MVA.cv Man page
MVA.load Man page
MVA.loadplot Man page
MVA.pairplot Man page
MVA.plot Man page
MVA.scoreplot Man page
MVA.scores Man page
MVA.synt Man page
MVA.test Man page
MVA.trajplot Man page
ord.rw Man page
OR.multinom Man page
overdisp.glmer Man page
pairwise.CDA.test Man page
pairwise.factorfit Man page
pairwise.G.test Man page
pairwise.manova Man page
pairwise.mood.medtest Man page
pairwise.MVA.test Man page
pairwise.perm.manova Man page
pairwise.perm.t.test Man page
pairwise.perm.var.test Man page
pairwise.to.groups Man page
pairwise.var.test Man page
pairwise.wilcox.rating.test Man page
pcor Man page
pcor.test Man page
perm.anova Man page
perm.bartlett.test Man page
perm.cor.test Man page
perm.t.test Man page
perm.t.test.default Man page
perm.t.test.formula Man page
perm.var.test Man page
perm.var.test.default Man page
perm.var.test.formula Man page
plot1comp.ind Man page
plot1comp.var Man page
plot.multtest.cor Man page
plot.multtest.gp Man page
plotresid Man page
plotsurvivors Man page
PLSDA.ncomp Man page
PLSDA.test Man page
PLSDA.VIP Man page
predict.CDA.cv Man page
predict.coadisc Man page
predict.MVA.cmv Man page
predict.MVA.cv Man page
prop.bin.multcomp Man page
prop.multcomp Man page
prop.multinom Man page
prop.multinom.test Man page
rating.lsmeans Man page
rating.prob Man page
reg.ci Man page
RVAideMemoire Man page
RVAideMemoire-package Man page
scat.cr Man page
scat.mix.categorical Man page
scat.mix.numeric Man page
scatter.coa2 Man page
s.corcircle2 Man page
se Man page
seq2 Man page
spearman.ci Man page
spearman.cor.multcomp Man page
splitf Man page
stand Man page
test.multinom Man page
to.dudi Man page
user.cont Man page
wald.ptheo.multinom.test Man page
wald.ptheo.test Man page
wilcox.paired.multcomp Man page
wilcox.paired.rating.multcomp Man page
wilcox.rating.signtest Man page
wilcox.rating.test Man page
wilcox.signtest Man page
wilcox.signtest.default Man page
wilcox.signtest.formula Man page
wmean Man page

Files

RVAideMemoire
RVAideMemoire/NAMESPACE
RVAideMemoire/NEWS
RVAideMemoire/R
RVAideMemoire/R/MVA.scoreplot.R
RVAideMemoire/R/dunn.test.R RVAideMemoire/R/perm.t.test.R RVAideMemoire/R/cond.multinom.R RVAideMemoire/R/pairwise.perm.t.test.R RVAideMemoire/R/byf.qqnorm.R RVAideMemoire/R/plotresid.R RVAideMemoire/R/MVA.anova.R RVAideMemoire/R/dummy.R RVAideMemoire/R/logis.fit.R RVAideMemoire/R/multinomial.theo.multcomp.R RVAideMemoire/R/rating.lsmeans.R RVAideMemoire/R/perm.var.test.R RVAideMemoire/R/bootstrap.R RVAideMemoire/R/cor.multcomp.R RVAideMemoire/R/MVA.plot.R RVAideMemoire/R/least.rect.R RVAideMemoire/R/coord.proj.R RVAideMemoire/R/MVA.trajplot.R RVAideMemoire/R/CvM.test.R RVAideMemoire/R/cramer.test.R RVAideMemoire/R/cv.R RVAideMemoire/R/print.RV.multcomp.R RVAideMemoire/R/G.theo.multcomp.R RVAideMemoire/R/OR.multinom.R RVAideMemoire/R/stand.R RVAideMemoire/R/prop.multcomp.R RVAideMemoire/R/perm.cor.test.R RVAideMemoire/R/wmean.R RVAideMemoire/R/reg.ci.R RVAideMemoire/R/adonis.II.R RVAideMemoire/R/mqqnorm.R RVAideMemoire/R/print.RVtest.R RVAideMemoire/R/multtest.cor.R RVAideMemoire/R/cdf.discrete.R RVAideMemoire/R/byf.hist.R RVAideMemoire/R/byf.mqqnorm.R RVAideMemoire/R/overdisp.glmer.R RVAideMemoire/R/wald.ptheo.multinom.test.R RVAideMemoire/R/se.R RVAideMemoire/R/wilcox.paired.multcomp.R RVAideMemoire/R/CDA.test.R RVAideMemoire/R/test.multinom.R RVAideMemoire/R/median.factor.R RVAideMemoire/R/mood.medtest.R RVAideMemoire/R/pairwise.G.test.R RVAideMemoire/R/predict.least.rect.R RVAideMemoire/R/fp.test.R RVAideMemoire/R/pairwise.perm.manova.R RVAideMemoire/R/splitf.R RVAideMemoire/R/pairwise.perm.var.test.R RVAideMemoire/R/byf.mshapiro.R RVAideMemoire/R/chisq.bintest.R RVAideMemoire/R/user.cont.R RVAideMemoire/R/cox.resid.R RVAideMemoire/R/plotsurvivors.R RVAideMemoire/R/cramer.R RVAideMemoire/R/mod.R RVAideMemoire/R/fisher.multcomp.R RVAideMemoire/R/multinomial.test.R
RVAideMemoire/R/MVA.loadplot.R
RVAideMemoire/R/dendro.gp.R RVAideMemoire/R/byf.shapiro.R RVAideMemoire/R/ord.rw.R RVAideMemoire/R/wilcox.signtest.R RVAideMemoire/R/prop.multinom.R RVAideMemoire/R/rating.prob.R RVAideMemoire/R/print.byf.test.R RVAideMemoire/R/MVA.ident.R RVAideMemoire/R/G.bintest.R RVAideMemoire/R/chisq.exp.R RVAideMemoire/R/deprecated.R RVAideMemoire/R/to.dudi.R RVAideMemoire/R/ind.contrib.R
RVAideMemoire/R/MVA.corplot.R
RVAideMemoire/R/MVA.test.R RVAideMemoire/R/GPA.test.R RVAideMemoire/R/pairwise.mood.medtest.R RVAideMemoire/R/G.multcomp.R RVAideMemoire/R/psignif.R RVAideMemoire/R/pcor.test.R RVAideMemoire/R/logis.noise.R RVAideMemoire/R/MVA.biplot.R RVAideMemoire/R/pairwise.MVA.test.R RVAideMemoire/R/prop.bin.multcomp.R RVAideMemoire/R/fisher.bintest.R RVAideMemoire/R/MVA.cor.R RVAideMemoire/R/cor.2comp.R RVAideMemoire/R/chisq.bin.exp.R RVAideMemoire/R/MVA.cmv.R RVAideMemoire/R/cochran.qtest.R
RVAideMemoire/R/Anova.clm.R
RVAideMemoire/R/spearman.cor.multcomp.R RVAideMemoire/R/multinomial.multcomp.R RVAideMemoire/R/PLSDA.VIP.R RVAideMemoire/R/seq2.R RVAideMemoire/R/predict.MVA.cv.R RVAideMemoire/R/spearman.ci.R RVAideMemoire/R/predict.CDA.cv.R RVAideMemoire/R/G.test.R RVAideMemoire/R/cor.conf.R RVAideMemoire/R/pcor.R RVAideMemoire/R/predict.coadisc.R RVAideMemoire/R/mshapiro.test.R RVAideMemoire/R/dhist.R RVAideMemoire/R/perm.anova.R RVAideMemoire/R/LDA.format.R RVAideMemoire/R/pairwise.var.test.R RVAideMemoire/R/multtest.gp.R RVAideMemoire/R/loc.slp.R RVAideMemoire/R/pairwise.to.groups.R RVAideMemoire/R/MVA.load.R RVAideMemoire/R/pairwise.factorfit.R RVAideMemoire/R/chisq.multcomp.R RVAideMemoire/R/MVA.pairplot.R RVAideMemoire/R/scat.cr.R RVAideMemoire/R/ci.R RVAideMemoire/R/zzz.R
RVAideMemoire/R/Anova.clmm.R
RVAideMemoire/R/MVA.scores.R RVAideMemoire/R/cov.test.R RVAideMemoire/R/inertia.R RVAideMemoire/R/chisq.theo.bintest.R RVAideMemoire/R/MVA.cv.R RVAideMemoire/R/findk.R RVAideMemoire/R/prop.multinom.test.R RVAideMemoire/R/pairwise.CDA.test.R RVAideMemoire/R/wald.ptheo.test.R RVAideMemoire/R/chisq.theo.multcomp.R RVAideMemoire/R/perm.bartlett.test.R RVAideMemoire/R/CDA.cv.R
RVAideMemoire/R/MVA.synt.R
RVAideMemoire/R/back.lsmeans.R
RVAideMemoire/MD5
RVAideMemoire/DESCRIPTION
RVAideMemoire/man
RVAideMemoire/man/MVA.synt.Rd RVAideMemoire/man/cramer.test.Rd RVAideMemoire/man/perm.t.test.Rd RVAideMemoire/man/MVA.corplot.Rd RVAideMemoire/man/wald.ptheo.test.Rd RVAideMemoire/man/perm.cor.test.Rd RVAideMemoire/man/byf.mqqnorm.Rd RVAideMemoire/man/reg.ci.Rd RVAideMemoire/man/multtest.gp.Rd RVAideMemoire/man/pairwise.to.groups.Rd RVAideMemoire/man/pairwise.mood.medtest.Rd RVAideMemoire/man/rating.lsmeans.Rd RVAideMemoire/man/cox.resid.Rd RVAideMemoire/man/cond.multinom.Rd RVAideMemoire/man/ind.contrib.Rd RVAideMemoire/man/bootstrap.Rd RVAideMemoire/man/MVA.loadplot.Rd RVAideMemoire/man/spearman.ci.Rd RVAideMemoire/man/to.dudi.Rd RVAideMemoire/man/cv.Rd RVAideMemoire/man/chisq.exp.Rd RVAideMemoire/man/deprecated.Rd RVAideMemoire/man/perm.var.test.Rd RVAideMemoire/man/pairwise.G.test.Rd RVAideMemoire/man/ord.rw.Rd RVAideMemoire/man/chisq.bintest.Rd RVAideMemoire/man/wald.ptheo.multinom.test.Rd RVAideMemoire/man/plotsurvivors.Rd RVAideMemoire/man/CvM.test.Rd RVAideMemoire/man/fp.test.Rd RVAideMemoire/man/wmean.Rd RVAideMemoire/man/prop.bin.multcomp.Rd RVAideMemoire/man/chisq.theo.bintest.Rd RVAideMemoire/man/MVA.cmv.Rd RVAideMemoire/man/loc.slp.Rd RVAideMemoire/man/G.theo.multcomp.Rd RVAideMemoire/man/cor.2comp.Rd RVAideMemoire/man/CDA.cv.Rd RVAideMemoire/man/logis.fit.Rd RVAideMemoire/man/GPA.test.Rd RVAideMemoire/man/chisq.theo.multcomp.Rd RVAideMemoire/man/seq2.Rd RVAideMemoire/man/OR.multinom.Rd RVAideMemoire/man/MVA.pairplot.Rd RVAideMemoire/man/dunn.test.Rd RVAideMemoire/man/byf.mshapiro.Rd RVAideMemoire/man/pairwise.MVA.test.Rd RVAideMemoire/man/mshapiro.test.Rd RVAideMemoire/man/MVA.scores.Rd RVAideMemoire/man/pcor.Rd RVAideMemoire/man/byf.qqnorm.Rd RVAideMemoire/man/multtest.cor.Rd RVAideMemoire/man/wilcox.paired.multcomp.Rd RVAideMemoire/man/cochran.qtest.Rd RVAideMemoire/man/pairwise.factorfit.Rd RVAideMemoire/man/overdisp.glmer.Rd RVAideMemoire/man/se.Rd RVAideMemoire/man/cov.test.Rd RVAideMemoire/man/wilcox.signtest.Rd RVAideMemoire/man/MVA.trajplot.Rd RVAideMemoire/man/multinomial.theo.multcomp.Rd RVAideMemoire/man/stand.Rd RVAideMemoire/man/splitf.Rd RVAideMemoire/man/fisher.bintest.Rd RVAideMemoire/man/pairwise.perm.var.test.Rd RVAideMemoire/man/chisq.bin.exp.Rd RVAideMemoire/man/G.test.Rd RVAideMemoire/man/MVA.biplot.Rd RVAideMemoire/man/cor.conf.Rd RVAideMemoire/man/MVA.plot.Rd RVAideMemoire/man/predict.CDA.cv.Rd RVAideMemoire/man/cdf.discrete.Rd RVAideMemoire/man/MVA.scoreplot.Rd RVAideMemoire/man/RVAideMemoire-package.Rd RVAideMemoire/man/predict.coadisc.Rd RVAideMemoire/man/MVA.load.Rd RVAideMemoire/man/cramer.Rd RVAideMemoire/man/scat.cr.Rd RVAideMemoire/man/mod.Rd RVAideMemoire/man/CDA.test.Rd RVAideMemoire/man/mqqnorm.Rd RVAideMemoire/man/least.rect.Rd RVAideMemoire/man/mood.medtest.Rd RVAideMemoire/man/pairwise.perm.t.test.Rd RVAideMemoire/man/G.multcomp.Rd RVAideMemoire/man/back.lsmeans.Rd RVAideMemoire/man/perm.anova.Rd RVAideMemoire/man/multinomial.multcomp.Rd RVAideMemoire/man/rating.prob.Rd RVAideMemoire/man/test.multinom.Rd RVAideMemoire/man/MVA.cv.Rd RVAideMemoire/man/dummy.Rd RVAideMemoire/man/MVA.test.Rd RVAideMemoire/man/perm.bartlett.test.Rd RVAideMemoire/man/Anova.clm.Rd RVAideMemoire/man/coord.proj.Rd RVAideMemoire/man/multinomial.test.Rd RVAideMemoire/man/MVA.cor.Rd RVAideMemoire/man/prop.multinom.test.Rd RVAideMemoire/man/cor.multcomp.Rd RVAideMemoire/man/user.cont.Rd RVAideMemoire/man/MVA.anova.Rd RVAideMemoire/man/spearman.cor.multcomp.Rd RVAideMemoire/man/prop.multinom.Rd RVAideMemoire/man/fisher.multcomp.Rd RVAideMemoire/man/dendro.gp.Rd RVAideMemoire/man/pairwise.var.test.Rd RVAideMemoire/man/plotresid.Rd RVAideMemoire/man/predict.MVA.cv.Rd RVAideMemoire/man/prop.multcomp.Rd RVAideMemoire/man/logis.noise.Rd RVAideMemoire/man/chisq.multcomp.Rd RVAideMemoire/man/adonis.II.Rd RVAideMemoire/man/byf.hist.Rd RVAideMemoire/man/pairwise.CDA.test.Rd RVAideMemoire/man/pcor.test.Rd RVAideMemoire/man/PLSDA.VIP.Rd RVAideMemoire/man/G.bintest.Rd RVAideMemoire/man/byf.shapiro.Rd RVAideMemoire/man/pairwise.perm.manova.Rd

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