RVAideMemoire: Diverse Basic Statistical and Graphical Functions

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Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.

Author
Maxime Herv
Date of publication
2016-10-31 22:37:03
Maintainer
Maxime Herv <mx.herve@gmail.com>
License
GPL-2
Version
0.9-61

View on CRAN

Man pages

adonis.II
Type II permutational MANOVA using distance matrices
Anova.clm
Anova Tables for Cumulative Link (Mixed) Models
back.lsmeans
Back-transformation of LSMeans
bootstrap
Bootstrap
byf.hist
Histogram for factor levels
byf.mqqnorm
QQ-plot for factor levels
byf.mshapiro
Shapiro-Wilk test for factor levels
byf.qqnorm
QQ-plot for factor levels
byf.shapiro
Shapiro-Wilk test for factor levels
CDA.cv
Cross validation
CDA.test
Significance test for CDA
cdf.discrete
Cumulative Distribution Function of a known discrete...
chisq.bin.exp
Expected counts for comparison of response probabilities to...
chisq.bintest
Pearson's Chi-squared test for binary variables
chisq.exp
Expected counts for comparison of proportions to given values
chisq.multcomp
Pairwise comparisons after a chi-squared goodness-of-fit test
chisq.theo.bintest
Pearson's Chi-squared test for comparison of response...
chisq.theo.multcomp
Pairwise comparisons after a chi-squared test for given...
cochran.qtest
Cochran's Q test
cond.multinom
Condition number of the Hessian matrix of a multinomial...
coord.proj
Coordinates of projected points
cor.2comp
Comparison of 2 Pearson's linear correlation coefficients
cor.conf
Equality of a Pearson's linear correlation coefficient to a...
cor.multcomp
Comparison of several Pearson's linear correlation...
cov.test
Significance test for the covariance between two datasets
cox.resid
Martingale residuals of a Cox model
cramer
Cramer's association coefficient
cramer.test
Cramer's association coefficient
cv
Coefficient of variation
CvM.test
Two-sample Cramer-von Mises test
dendro.gp
Dendrogram and number of groups to be chosen
deprecated
Deprecated functions in RVAideMemoire package
dummy
Dummy responses
dunn.test
Dunn's test
fisher.bintest
Fisher's exact test for binary variables
fisher.multcomp
Pairwise comparisons using Fisher's exact test
fp.test
Fligner-Policello test
G.bintest
G-test for binary variables
G.multcomp
Pairwise comparisons after a G-test
GPA.test
Significance test for GPA
G.test
G-test
G.theo.multcomp
Pairwise comparisons after a G-test for given probabilities
ind.contrib
Individual contributions in regression
least.rect
Least rectangles linear regression
loc.slp
Slope of a hand-defined line
logis.fit
Graphical adujstment of a simple binary logistic regression...
logis.noise
Creating a nls model for logistic regression from fitted...
mod
Mode
mood.medtest
Mood's median test
mqqnorm
Multivariate normality QQ-Plot
mshapiro.test
Shapiro-Wilk multivariate normality test
multinomial.multcomp
Pairwise comparisons after an exact multinomial test
multinomial.test
Exact multinomial test
multinomial.theo.multcomp
Pairwise comparisons after an exact multinomial test for...
multtest.cor
Univariate correlation test for multiple variables
multtest.gp
Univariate comparison of groups for multiple variables
MVA.anova
Type II permutational test for constrained multivariate...
MVA.biplot
Biplot of multivariate analyses
MVA.cmv
Cross model validation
MVA.cor
Correlations of multivariate analyses
MVA.corplot
Correlation circle of multivariate analyses
MVA.cv
Cross validation
MVA.load
Loadings of multivariate analyses
MVA.loadplot
Loading plot of multivariate analyses
MVA.pairplot
Paired plot of multivariate analyses
MVA.plot
Plotting of multivariate analyses
MVA.scoreplot
Score plot of multivariate analyses
MVA.scores
Scores of multivariate analyses
MVA.synt
Synthesis quality of multivariate analyses
MVA.test
Significance test based on cross (model) validation
MVA.trajplot
Trajectory plot of multivariate analyses
ord.rw
Re-computation of an ordination using given row weights
OR.multinom
Odds-ratio (multinomial regression)
overdisp.glmer
Estimation of overdispersion with 'glmer' models
pairwise.CDA.test
Pairwise comparisons for CDA
pairwise.factorfit
Pairwise comparisons of groups displayed on a factorial map
pairwise.G.test
Pairwise comparisons for proportions using G-tests
pairwise.mood.medtest
Pairwise Mood's median tests
pairwise.MVA.test
Pairwise permutational tests based on cross (model)...
pairwise.perm.manova
Pairwise permutational MANOVAs
pairwise.perm.t.test
Pairwise permutational t tests
pairwise.to.groups
Letter summary of similarities and differences
pcor
(Semi-)Partial correlation
pcor.test
Tests for (semi-)partial association/correlation between...
perm.anova
Permutational Analysis of Variance
perm.bartlett.test
Permutational Bartlett's test of homogeneity of variances
perm.cor.test
Permutational Pearson's correlation test
perm.t.test
Permutational Student's t-test
perm.var.test
Permutational F test to compare two variances
plotresid
Simple analysis of model residuals
plotsurvivors
Survivor curve
PLSDA.VIP
Variable Importance in the Projection (VIP)
predict.CDA.cv
Predict method for cross-validated CDA submodels
predict.coadisc
Predict method for CDA
predict.MVA.cv
Predict method for cross-validated submodels
prop.bin.multcomp
Pairwise comparisons after a test for given probabilities
prop.multcomp
Pairwise comparisons after a test for given proportions
prop.multinom
Proportions and standard errors
prop.multinom.test
Wald tests for comparison of proportions
rating.lsmeans
LSMeans for Cumulative Link (Mixed) Models
rating.prob
Observed rating frequencies
reg.ci
Confidence intervals of a simple linear regression
RVAideMemoire-package
Diverse Basic Statistical and Graphical Functions
scat.cr
"Correlation" of variables to axes in MCA or mix analyses
se
Standard error
seq2
Sequence generation
spearman.ci
Confidence interval of a Spearman's rank correlation...
spearman.cor.multcomp
Comparison of several Spearman's rank correlation...
splitf
Divide into groups respecting relative proportions
stand
Standardization of a data frame based on another data frame
test.multinom
Significance tests of coefficients (multinomial regression)
to.dudi
Synthesis quality of multivariate analyses
user.cont
User defined contrasts for LSMeans
wald.ptheo.multinom.test
Wald tests for comparison of proportions to theoretical...
wald.ptheo.test
Wald test for comparison of a proportion to a theoretical...
wilcox.paired.multcomp
Non parametric pairwise comparisons for paired data
wilcox.signtest
Wilcoxon sign test
wmean
Weighted arithmetic mean

Files in this package

RVAideMemoire
RVAideMemoire/NAMESPACE
RVAideMemoire/NEWS
RVAideMemoire/R
RVAideMemoire/R/MVA.scoreplot.R
RVAideMemoire/R/dunn.test.R
RVAideMemoire/R/perm.t.test.R
RVAideMemoire/R/cond.multinom.R
RVAideMemoire/R/pairwise.perm.t.test.R
RVAideMemoire/R/byf.qqnorm.R
RVAideMemoire/R/plotresid.R
RVAideMemoire/R/MVA.anova.R
RVAideMemoire/R/dummy.R
RVAideMemoire/R/logis.fit.R
RVAideMemoire/R/multinomial.theo.multcomp.R
RVAideMemoire/R/rating.lsmeans.R
RVAideMemoire/R/perm.var.test.R
RVAideMemoire/R/bootstrap.R
RVAideMemoire/R/cor.multcomp.R
RVAideMemoire/R/MVA.plot.R
RVAideMemoire/R/least.rect.R
RVAideMemoire/R/coord.proj.R
RVAideMemoire/R/MVA.trajplot.R
RVAideMemoire/R/CvM.test.R
RVAideMemoire/R/cramer.test.R
RVAideMemoire/R/cv.R
RVAideMemoire/R/print.RV.multcomp.R
RVAideMemoire/R/G.theo.multcomp.R
RVAideMemoire/R/OR.multinom.R
RVAideMemoire/R/stand.R
RVAideMemoire/R/prop.multcomp.R
RVAideMemoire/R/perm.cor.test.R
RVAideMemoire/R/wmean.R
RVAideMemoire/R/reg.ci.R
RVAideMemoire/R/adonis.II.R
RVAideMemoire/R/mqqnorm.R
RVAideMemoire/R/print.RVtest.R
RVAideMemoire/R/multtest.cor.R
RVAideMemoire/R/cdf.discrete.R
RVAideMemoire/R/byf.hist.R
RVAideMemoire/R/byf.mqqnorm.R
RVAideMemoire/R/overdisp.glmer.R
RVAideMemoire/R/wald.ptheo.multinom.test.R
RVAideMemoire/R/se.R
RVAideMemoire/R/wilcox.paired.multcomp.R
RVAideMemoire/R/CDA.test.R
RVAideMemoire/R/test.multinom.R
RVAideMemoire/R/median.factor.R
RVAideMemoire/R/mood.medtest.R
RVAideMemoire/R/pairwise.G.test.R
RVAideMemoire/R/predict.least.rect.R
RVAideMemoire/R/fp.test.R
RVAideMemoire/R/pairwise.perm.manova.R
RVAideMemoire/R/splitf.R
RVAideMemoire/R/byf.mshapiro.R
RVAideMemoire/R/chisq.bintest.R
RVAideMemoire/R/user.cont.R
RVAideMemoire/R/cox.resid.R
RVAideMemoire/R/plotsurvivors.R
RVAideMemoire/R/cramer.R
RVAideMemoire/R/mod.R
RVAideMemoire/R/fisher.multcomp.R
RVAideMemoire/R/multinomial.test.R
RVAideMemoire/R/MVA.loadplot.R
RVAideMemoire/R/dendro.gp.R
RVAideMemoire/R/byf.shapiro.R
RVAideMemoire/R/ord.rw.R
RVAideMemoire/R/wilcox.signtest.R
RVAideMemoire/R/prop.multinom.R
RVAideMemoire/R/rating.prob.R
RVAideMemoire/R/print.byf.test.R
RVAideMemoire/R/MVA.ident.R
RVAideMemoire/R/G.bintest.R
RVAideMemoire/R/chisq.exp.R
RVAideMemoire/R/deprecated.R
RVAideMemoire/R/to.dudi.R
RVAideMemoire/R/ind.contrib.R
RVAideMemoire/R/MVA.corplot.R
RVAideMemoire/R/MVA.test.R
RVAideMemoire/R/GPA.test.R
RVAideMemoire/R/pairwise.mood.medtest.R
RVAideMemoire/R/G.multcomp.R
RVAideMemoire/R/psignif.R
RVAideMemoire/R/pcor.test.R
RVAideMemoire/R/logis.noise.R
RVAideMemoire/R/MVA.biplot.R
RVAideMemoire/R/pairwise.MVA.test.R
RVAideMemoire/R/prop.bin.multcomp.R
RVAideMemoire/R/fisher.bintest.R
RVAideMemoire/R/MVA.cor.R
RVAideMemoire/R/cor.2comp.R
RVAideMemoire/R/chisq.bin.exp.R
RVAideMemoire/R/MVA.cmv.R
RVAideMemoire/R/cochran.qtest.R
RVAideMemoire/R/Anova.clm.R
RVAideMemoire/R/spearman.cor.multcomp.R
RVAideMemoire/R/multinomial.multcomp.R
RVAideMemoire/R/PLSDA.VIP.R
RVAideMemoire/R/seq2.R
RVAideMemoire/R/predict.MVA.cv.R
RVAideMemoire/R/spearman.ci.R
RVAideMemoire/R/predict.CDA.cv.R
RVAideMemoire/R/G.test.R
RVAideMemoire/R/cor.conf.R
RVAideMemoire/R/pcor.R
RVAideMemoire/R/predict.coadisc.R
RVAideMemoire/R/mshapiro.test.R
RVAideMemoire/R/dhist.R
RVAideMemoire/R/perm.anova.R
RVAideMemoire/R/LDA.format.R
RVAideMemoire/R/multtest.gp.R
RVAideMemoire/R/loc.slp.R
RVAideMemoire/R/pairwise.to.groups.R
RVAideMemoire/R/MVA.load.R
RVAideMemoire/R/pairwise.factorfit.R
RVAideMemoire/R/chisq.multcomp.R
RVAideMemoire/R/MVA.pairplot.R
RVAideMemoire/R/scat.cr.R
RVAideMemoire/R/ci.R
RVAideMemoire/R/zzz.R
RVAideMemoire/R/Anova.clmm.R
RVAideMemoire/R/MVA.scores.R
RVAideMemoire/R/cov.test.R
RVAideMemoire/R/inertia.R
RVAideMemoire/R/chisq.theo.bintest.R
RVAideMemoire/R/MVA.cv.R
RVAideMemoire/R/findk.R
RVAideMemoire/R/prop.multinom.test.R
RVAideMemoire/R/pairwise.CDA.test.R
RVAideMemoire/R/wald.ptheo.test.R
RVAideMemoire/R/chisq.theo.multcomp.R
RVAideMemoire/R/perm.bartlett.test.R
RVAideMemoire/R/CDA.cv.R
RVAideMemoire/R/MVA.synt.R
RVAideMemoire/R/back.lsmeans.R
RVAideMemoire/MD5
RVAideMemoire/DESCRIPTION
RVAideMemoire/man
RVAideMemoire/man/MVA.synt.Rd
RVAideMemoire/man/cramer.test.Rd
RVAideMemoire/man/perm.t.test.Rd
RVAideMemoire/man/MVA.corplot.Rd
RVAideMemoire/man/wald.ptheo.test.Rd
RVAideMemoire/man/perm.cor.test.Rd
RVAideMemoire/man/byf.mqqnorm.Rd
RVAideMemoire/man/reg.ci.Rd
RVAideMemoire/man/multtest.gp.Rd
RVAideMemoire/man/pairwise.to.groups.Rd
RVAideMemoire/man/pairwise.mood.medtest.Rd
RVAideMemoire/man/rating.lsmeans.Rd
RVAideMemoire/man/cox.resid.Rd
RVAideMemoire/man/cond.multinom.Rd
RVAideMemoire/man/ind.contrib.Rd
RVAideMemoire/man/bootstrap.Rd
RVAideMemoire/man/MVA.loadplot.Rd
RVAideMemoire/man/spearman.ci.Rd
RVAideMemoire/man/to.dudi.Rd
RVAideMemoire/man/cv.Rd
RVAideMemoire/man/chisq.exp.Rd
RVAideMemoire/man/deprecated.Rd
RVAideMemoire/man/perm.var.test.Rd
RVAideMemoire/man/pairwise.G.test.Rd
RVAideMemoire/man/ord.rw.Rd
RVAideMemoire/man/chisq.bintest.Rd
RVAideMemoire/man/wald.ptheo.multinom.test.Rd
RVAideMemoire/man/plotsurvivors.Rd
RVAideMemoire/man/CvM.test.Rd
RVAideMemoire/man/fp.test.Rd
RVAideMemoire/man/wmean.Rd
RVAideMemoire/man/prop.bin.multcomp.Rd
RVAideMemoire/man/chisq.theo.bintest.Rd
RVAideMemoire/man/MVA.cmv.Rd
RVAideMemoire/man/loc.slp.Rd
RVAideMemoire/man/G.theo.multcomp.Rd
RVAideMemoire/man/cor.2comp.Rd
RVAideMemoire/man/CDA.cv.Rd
RVAideMemoire/man/logis.fit.Rd
RVAideMemoire/man/GPA.test.Rd
RVAideMemoire/man/chisq.theo.multcomp.Rd
RVAideMemoire/man/seq2.Rd
RVAideMemoire/man/OR.multinom.Rd
RVAideMemoire/man/MVA.pairplot.Rd
RVAideMemoire/man/dunn.test.Rd
RVAideMemoire/man/byf.mshapiro.Rd
RVAideMemoire/man/pairwise.MVA.test.Rd
RVAideMemoire/man/mshapiro.test.Rd
RVAideMemoire/man/MVA.scores.Rd
RVAideMemoire/man/pcor.Rd
RVAideMemoire/man/byf.qqnorm.Rd
RVAideMemoire/man/multtest.cor.Rd
RVAideMemoire/man/wilcox.paired.multcomp.Rd
RVAideMemoire/man/cochran.qtest.Rd
RVAideMemoire/man/pairwise.factorfit.Rd
RVAideMemoire/man/overdisp.glmer.Rd
RVAideMemoire/man/se.Rd
RVAideMemoire/man/cov.test.Rd
RVAideMemoire/man/wilcox.signtest.Rd
RVAideMemoire/man/MVA.trajplot.Rd
RVAideMemoire/man/multinomial.theo.multcomp.Rd
RVAideMemoire/man/stand.Rd
RVAideMemoire/man/splitf.Rd
RVAideMemoire/man/fisher.bintest.Rd
RVAideMemoire/man/chisq.bin.exp.Rd
RVAideMemoire/man/G.test.Rd
RVAideMemoire/man/MVA.biplot.Rd
RVAideMemoire/man/cor.conf.Rd
RVAideMemoire/man/MVA.plot.Rd
RVAideMemoire/man/predict.CDA.cv.Rd
RVAideMemoire/man/cdf.discrete.Rd
RVAideMemoire/man/MVA.scoreplot.Rd
RVAideMemoire/man/RVAideMemoire-package.Rd
RVAideMemoire/man/predict.coadisc.Rd
RVAideMemoire/man/MVA.load.Rd
RVAideMemoire/man/cramer.Rd
RVAideMemoire/man/scat.cr.Rd
RVAideMemoire/man/mod.Rd
RVAideMemoire/man/CDA.test.Rd
RVAideMemoire/man/mqqnorm.Rd
RVAideMemoire/man/least.rect.Rd
RVAideMemoire/man/mood.medtest.Rd
RVAideMemoire/man/pairwise.perm.t.test.Rd
RVAideMemoire/man/G.multcomp.Rd
RVAideMemoire/man/back.lsmeans.Rd
RVAideMemoire/man/perm.anova.Rd
RVAideMemoire/man/multinomial.multcomp.Rd
RVAideMemoire/man/rating.prob.Rd
RVAideMemoire/man/test.multinom.Rd
RVAideMemoire/man/MVA.cv.Rd
RVAideMemoire/man/dummy.Rd
RVAideMemoire/man/MVA.test.Rd
RVAideMemoire/man/perm.bartlett.test.Rd
RVAideMemoire/man/Anova.clm.Rd
RVAideMemoire/man/coord.proj.Rd
RVAideMemoire/man/multinomial.test.Rd
RVAideMemoire/man/MVA.cor.Rd
RVAideMemoire/man/prop.multinom.test.Rd
RVAideMemoire/man/cor.multcomp.Rd
RVAideMemoire/man/user.cont.Rd
RVAideMemoire/man/MVA.anova.Rd
RVAideMemoire/man/spearman.cor.multcomp.Rd
RVAideMemoire/man/prop.multinom.Rd
RVAideMemoire/man/fisher.multcomp.Rd
RVAideMemoire/man/dendro.gp.Rd
RVAideMemoire/man/plotresid.Rd
RVAideMemoire/man/predict.MVA.cv.Rd
RVAideMemoire/man/prop.multcomp.Rd
RVAideMemoire/man/logis.noise.Rd
RVAideMemoire/man/chisq.multcomp.Rd
RVAideMemoire/man/adonis.II.Rd
RVAideMemoire/man/byf.hist.Rd
RVAideMemoire/man/pairwise.CDA.test.Rd
RVAideMemoire/man/pcor.test.Rd
RVAideMemoire/man/PLSDA.VIP.Rd
RVAideMemoire/man/G.bintest.Rd
RVAideMemoire/man/byf.shapiro.Rd
RVAideMemoire/man/pairwise.perm.manova.Rd