RVAideMemoire: Diverse Basic Statistical and Graphical Functions

Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.

AuthorMaxime Herv
Date of publication2016-12-13 07:56:54
MaintainerMaxime Herv <mx.herve@gmail.com>
LicenseGPL-2
Version0.9-62

View on CRAN

Man pages

adonis.II: Type II permutational MANOVA using distance matrices

Anova.clm: Anova Tables for Cumulative Link (Mixed) Models

back.lsmeans: Back-transformation of LSMeans

bootstrap: Bootstrap

byf.hist: Histogram for factor levels

byf.mqqnorm: QQ-plot for factor levels

byf.mshapiro: Shapiro-Wilk test for factor levels

byf.qqnorm: QQ-plot for factor levels

byf.shapiro: Shapiro-Wilk test for factor levels

CDA.cv: Cross validation

CDA.test: Significance test for CDA

cdf.discrete: Cumulative Distribution Function of a known discrete...

chisq.bin.exp: Expected counts for comparison of response probabilities to...

chisq.bintest: Pearson's Chi-squared test for binary variables

chisq.exp: Expected counts for comparison of proportions to given values

chisq.multcomp: Pairwise comparisons after a chi-squared goodness-of-fit test

chisq.theo.bintest: Pearson's Chi-squared test for comparison of response...

chisq.theo.multcomp: Pairwise comparisons after a chi-squared test for given...

cochran.qtest: Cochran's Q test

cond.multinom: Condition number of the Hessian matrix of a multinomial...

coord.proj: Coordinates of projected points

cor.2comp: Comparison of 2 Pearson's linear correlation coefficients

cor.conf: Equality of a Pearson's linear correlation coefficient to a...

cor.multcomp: Comparison of several Pearson's linear correlation...

cov.test: Significance test for the covariance between two datasets

cox.resid: Martingale residuals of a Cox model

cramer: Cramer's association coefficient

cramer.test: Cramer's association coefficient

cv: Coefficient of variation

CvM.test: Two-sample Cramer-von Mises test

dendro.gp: Dendrogram and number of groups to be chosen

deprecated: Deprecated functions in RVAideMemoire package

dummy: Dummy responses

dunn.test: Dunn's test

fisher.bintest: Fisher's exact test for binary variables

fisher.multcomp: Pairwise comparisons using Fisher's exact test

fp.test: Fligner-Policello test

G.bintest: G-test for binary variables

G.multcomp: Pairwise comparisons after a G-test

GPA.test: Significance test for GPA

G.test: G-test

G.theo.multcomp: Pairwise comparisons after a G-test for given probabilities

ind.contrib: Individual contributions in regression

least.rect: Least rectangles linear regression

loc.slp: Slope of a hand-defined line

logis.fit: Graphical adujstment of a simple binary logistic regression...

logis.noise: Creating a nls model for logistic regression from fitted...

mod: Mode

mood.medtest: Mood's median test

mqqnorm: Multivariate normality QQ-Plot

mshapiro.test: Shapiro-Wilk multivariate normality test

multinomial.multcomp: Pairwise comparisons after an exact multinomial test

multinomial.test: Exact multinomial test

multinomial.theo.multcomp: Pairwise comparisons after an exact multinomial test for...

multtest.cor: Univariate correlation test for multiple variables

multtest.gp: Univariate comparison of groups for multiple variables

MVA.anova: Type II permutational test for constrained multivariate...

MVA.biplot: Biplot of multivariate analyses

MVA.cmv: Cross model validation

MVA.cor: Correlations of multivariate analyses

MVA.corplot: Correlation circle of multivariate analyses

MVA.cv: Cross validation

MVA.load: Loadings of multivariate analyses

MVA.loadplot: Loading plot of multivariate analyses

MVA.pairplot: Paired plot of multivariate analyses

MVA.plot: Plotting of multivariate analyses

MVA.scoreplot: Score plot of multivariate analyses

MVA.scores: Scores of multivariate analyses

MVA.synt: Synthesis quality of multivariate analyses

MVA.test: Significance test based on cross (model) validation

MVA.trajplot: Trajectory plot of multivariate analyses

ord.rw: Re-computation of an ordination using given row weights

OR.multinom: Odds-ratio (multinomial regression)

overdisp.glmer: Estimation of overdispersion with 'glmer' models

pairwise.CDA.test: Pairwise comparisons for CDA

pairwise.factorfit: Pairwise comparisons of groups displayed on a factorial map

pairwise.G.test: Pairwise comparisons for proportions using G-tests

pairwise.mood.medtest: Pairwise Mood's median tests

pairwise.MVA.test: Pairwise permutational tests based on cross (model)...

pairwise.perm.manova: Pairwise permutational MANOVAs

pairwise.perm.t.test: Pairwise permutational t tests

pairwise.to.groups: Letter summary of similarities and differences

pcor: (Semi-)Partial correlation

pcor.test: Tests for (semi-)partial association/correlation between...

perm.anova: Permutational Analysis of Variance

perm.bartlett.test: Permutational Bartlett's test of homogeneity of variances

perm.cor.test: Permutational Pearson's correlation test

perm.t.test: Permutational Student's t-test

perm.var.test: Permutational F test to compare two variances

plotresid: Simple analysis of model residuals

plotsurvivors: Survivor curve

PLSDA.VIP: Variable Importance in the Projection (VIP)

predict.CDA.cv: Predict method for cross-validated CDA submodels

predict.coadisc: Predict method for CDA

predict.MVA.cv: Predict method for cross-validated submodels

prop.bin.multcomp: Pairwise comparisons after a test for given probabilities

prop.multcomp: Pairwise comparisons after a test for given proportions

prop.multinom: Proportions and standard errors

prop.multinom.test: Wald tests for comparison of proportions

rating.lsmeans: LSMeans for Cumulative Link (Mixed) Models

rating.prob: Observed rating frequencies

reg.ci: Confidence intervals of a simple linear regression

RVAideMemoire-package: Diverse Basic Statistical and Graphical Functions

scat.cr: "Correlation" of variables to axes in MCA or mix analyses

se: Standard error

seq2: Sequence generation

spearman.ci: Confidence interval of a Spearman's rank correlation...

spearman.cor.multcomp: Comparison of several Spearman's rank correlation...

splitf: Divide into groups respecting relative proportions

stand: Standardization of a data frame based on another data frame

test.multinom: Significance tests of coefficients (multinomial regression)

to.dudi: Synthesis quality of multivariate analyses

user.cont: User defined contrasts for LSMeans

wald.ptheo.multinom.test: Wald tests for comparison of proportions to theoretical...

wald.ptheo.test: Wald test for comparison of a proportion to a theoretical...

wilcox.paired.multcomp: Non parametric pairwise comparisons for paired data

wilcox.signtest: Wilcoxon sign test

wmean: Weighted arithmetic mean

Files in this package

RVAideMemoire
RVAideMemoire/NAMESPACE
RVAideMemoire/NEWS
RVAideMemoire/R
RVAideMemoire/R/MVA.scoreplot.R
RVAideMemoire/R/dunn.test.R RVAideMemoire/R/perm.t.test.R RVAideMemoire/R/cond.multinom.R RVAideMemoire/R/pairwise.perm.t.test.R RVAideMemoire/R/byf.qqnorm.R RVAideMemoire/R/plotresid.R RVAideMemoire/R/MVA.anova.R RVAideMemoire/R/dummy.R RVAideMemoire/R/logis.fit.R RVAideMemoire/R/multinomial.theo.multcomp.R RVAideMemoire/R/rating.lsmeans.R RVAideMemoire/R/perm.var.test.R RVAideMemoire/R/bootstrap.R RVAideMemoire/R/cor.multcomp.R RVAideMemoire/R/MVA.plot.R RVAideMemoire/R/least.rect.R RVAideMemoire/R/coord.proj.R RVAideMemoire/R/MVA.trajplot.R RVAideMemoire/R/CvM.test.R RVAideMemoire/R/cramer.test.R RVAideMemoire/R/cv.R RVAideMemoire/R/print.RV.multcomp.R RVAideMemoire/R/G.theo.multcomp.R RVAideMemoire/R/OR.multinom.R RVAideMemoire/R/stand.R RVAideMemoire/R/prop.multcomp.R RVAideMemoire/R/perm.cor.test.R RVAideMemoire/R/wmean.R RVAideMemoire/R/reg.ci.R RVAideMemoire/R/adonis.II.R RVAideMemoire/R/mqqnorm.R RVAideMemoire/R/print.RVtest.R RVAideMemoire/R/multtest.cor.R RVAideMemoire/R/cdf.discrete.R RVAideMemoire/R/byf.hist.R RVAideMemoire/R/byf.mqqnorm.R RVAideMemoire/R/overdisp.glmer.R RVAideMemoire/R/wald.ptheo.multinom.test.R RVAideMemoire/R/se.R RVAideMemoire/R/wilcox.paired.multcomp.R RVAideMemoire/R/CDA.test.R RVAideMemoire/R/test.multinom.R RVAideMemoire/R/median.factor.R RVAideMemoire/R/mood.medtest.R RVAideMemoire/R/pairwise.G.test.R RVAideMemoire/R/predict.least.rect.R RVAideMemoire/R/fp.test.R RVAideMemoire/R/pairwise.perm.manova.R RVAideMemoire/R/splitf.R RVAideMemoire/R/byf.mshapiro.R RVAideMemoire/R/chisq.bintest.R RVAideMemoire/R/user.cont.R RVAideMemoire/R/cox.resid.R RVAideMemoire/R/plotsurvivors.R RVAideMemoire/R/cramer.R RVAideMemoire/R/mod.R RVAideMemoire/R/fisher.multcomp.R RVAideMemoire/R/multinomial.test.R
RVAideMemoire/R/MVA.loadplot.R
RVAideMemoire/R/dendro.gp.R RVAideMemoire/R/byf.shapiro.R RVAideMemoire/R/ord.rw.R RVAideMemoire/R/wilcox.signtest.R RVAideMemoire/R/prop.multinom.R RVAideMemoire/R/rating.prob.R RVAideMemoire/R/print.byf.test.R RVAideMemoire/R/MVA.ident.R RVAideMemoire/R/G.bintest.R RVAideMemoire/R/chisq.exp.R RVAideMemoire/R/deprecated.R RVAideMemoire/R/to.dudi.R RVAideMemoire/R/ind.contrib.R
RVAideMemoire/R/MVA.corplot.R
RVAideMemoire/R/MVA.test.R RVAideMemoire/R/GPA.test.R RVAideMemoire/R/pairwise.mood.medtest.R RVAideMemoire/R/G.multcomp.R RVAideMemoire/R/psignif.R RVAideMemoire/R/pcor.test.R RVAideMemoire/R/logis.noise.R RVAideMemoire/R/MVA.biplot.R RVAideMemoire/R/pairwise.MVA.test.R RVAideMemoire/R/prop.bin.multcomp.R RVAideMemoire/R/fisher.bintest.R RVAideMemoire/R/MVA.cor.R RVAideMemoire/R/cor.2comp.R RVAideMemoire/R/chisq.bin.exp.R RVAideMemoire/R/MVA.cmv.R RVAideMemoire/R/cochran.qtest.R
RVAideMemoire/R/Anova.clm.R
RVAideMemoire/R/spearman.cor.multcomp.R RVAideMemoire/R/multinomial.multcomp.R RVAideMemoire/R/PLSDA.VIP.R RVAideMemoire/R/seq2.R RVAideMemoire/R/predict.MVA.cv.R RVAideMemoire/R/spearman.ci.R RVAideMemoire/R/predict.CDA.cv.R RVAideMemoire/R/G.test.R RVAideMemoire/R/cor.conf.R RVAideMemoire/R/pcor.R RVAideMemoire/R/predict.coadisc.R RVAideMemoire/R/mshapiro.test.R RVAideMemoire/R/dhist.R RVAideMemoire/R/perm.anova.R RVAideMemoire/R/LDA.format.R RVAideMemoire/R/multtest.gp.R RVAideMemoire/R/loc.slp.R RVAideMemoire/R/pairwise.to.groups.R RVAideMemoire/R/MVA.load.R RVAideMemoire/R/pairwise.factorfit.R RVAideMemoire/R/chisq.multcomp.R RVAideMemoire/R/MVA.pairplot.R RVAideMemoire/R/scat.cr.R RVAideMemoire/R/ci.R RVAideMemoire/R/zzz.R
RVAideMemoire/R/Anova.clmm.R
RVAideMemoire/R/MVA.scores.R RVAideMemoire/R/cov.test.R RVAideMemoire/R/inertia.R RVAideMemoire/R/chisq.theo.bintest.R RVAideMemoire/R/MVA.cv.R RVAideMemoire/R/findk.R RVAideMemoire/R/prop.multinom.test.R RVAideMemoire/R/pairwise.CDA.test.R RVAideMemoire/R/wald.ptheo.test.R RVAideMemoire/R/chisq.theo.multcomp.R RVAideMemoire/R/perm.bartlett.test.R RVAideMemoire/R/CDA.cv.R
RVAideMemoire/R/MVA.synt.R
RVAideMemoire/R/back.lsmeans.R
RVAideMemoire/MD5
RVAideMemoire/DESCRIPTION
RVAideMemoire/man
RVAideMemoire/man/MVA.synt.Rd RVAideMemoire/man/cramer.test.Rd RVAideMemoire/man/perm.t.test.Rd RVAideMemoire/man/MVA.corplot.Rd RVAideMemoire/man/wald.ptheo.test.Rd RVAideMemoire/man/perm.cor.test.Rd RVAideMemoire/man/byf.mqqnorm.Rd RVAideMemoire/man/reg.ci.Rd RVAideMemoire/man/multtest.gp.Rd RVAideMemoire/man/pairwise.to.groups.Rd RVAideMemoire/man/pairwise.mood.medtest.Rd RVAideMemoire/man/rating.lsmeans.Rd RVAideMemoire/man/cox.resid.Rd RVAideMemoire/man/cond.multinom.Rd RVAideMemoire/man/ind.contrib.Rd RVAideMemoire/man/bootstrap.Rd RVAideMemoire/man/MVA.loadplot.Rd RVAideMemoire/man/spearman.ci.Rd RVAideMemoire/man/to.dudi.Rd RVAideMemoire/man/cv.Rd RVAideMemoire/man/chisq.exp.Rd RVAideMemoire/man/deprecated.Rd RVAideMemoire/man/perm.var.test.Rd RVAideMemoire/man/pairwise.G.test.Rd RVAideMemoire/man/ord.rw.Rd RVAideMemoire/man/chisq.bintest.Rd RVAideMemoire/man/wald.ptheo.multinom.test.Rd RVAideMemoire/man/plotsurvivors.Rd RVAideMemoire/man/CvM.test.Rd RVAideMemoire/man/fp.test.Rd RVAideMemoire/man/wmean.Rd RVAideMemoire/man/prop.bin.multcomp.Rd RVAideMemoire/man/chisq.theo.bintest.Rd RVAideMemoire/man/MVA.cmv.Rd RVAideMemoire/man/loc.slp.Rd RVAideMemoire/man/G.theo.multcomp.Rd RVAideMemoire/man/cor.2comp.Rd RVAideMemoire/man/CDA.cv.Rd RVAideMemoire/man/logis.fit.Rd RVAideMemoire/man/GPA.test.Rd RVAideMemoire/man/chisq.theo.multcomp.Rd RVAideMemoire/man/seq2.Rd RVAideMemoire/man/OR.multinom.Rd RVAideMemoire/man/MVA.pairplot.Rd RVAideMemoire/man/dunn.test.Rd RVAideMemoire/man/byf.mshapiro.Rd RVAideMemoire/man/pairwise.MVA.test.Rd RVAideMemoire/man/mshapiro.test.Rd RVAideMemoire/man/MVA.scores.Rd RVAideMemoire/man/pcor.Rd RVAideMemoire/man/byf.qqnorm.Rd RVAideMemoire/man/multtest.cor.Rd RVAideMemoire/man/wilcox.paired.multcomp.Rd RVAideMemoire/man/cochran.qtest.Rd RVAideMemoire/man/pairwise.factorfit.Rd RVAideMemoire/man/overdisp.glmer.Rd RVAideMemoire/man/se.Rd RVAideMemoire/man/cov.test.Rd RVAideMemoire/man/wilcox.signtest.Rd RVAideMemoire/man/MVA.trajplot.Rd RVAideMemoire/man/multinomial.theo.multcomp.Rd RVAideMemoire/man/stand.Rd RVAideMemoire/man/splitf.Rd RVAideMemoire/man/fisher.bintest.Rd RVAideMemoire/man/chisq.bin.exp.Rd RVAideMemoire/man/G.test.Rd RVAideMemoire/man/MVA.biplot.Rd RVAideMemoire/man/cor.conf.Rd RVAideMemoire/man/MVA.plot.Rd RVAideMemoire/man/predict.CDA.cv.Rd RVAideMemoire/man/cdf.discrete.Rd RVAideMemoire/man/MVA.scoreplot.Rd RVAideMemoire/man/RVAideMemoire-package.Rd RVAideMemoire/man/predict.coadisc.Rd RVAideMemoire/man/MVA.load.Rd RVAideMemoire/man/cramer.Rd RVAideMemoire/man/scat.cr.Rd RVAideMemoire/man/mod.Rd RVAideMemoire/man/CDA.test.Rd RVAideMemoire/man/mqqnorm.Rd RVAideMemoire/man/least.rect.Rd RVAideMemoire/man/mood.medtest.Rd RVAideMemoire/man/pairwise.perm.t.test.Rd RVAideMemoire/man/G.multcomp.Rd RVAideMemoire/man/back.lsmeans.Rd RVAideMemoire/man/perm.anova.Rd RVAideMemoire/man/multinomial.multcomp.Rd RVAideMemoire/man/rating.prob.Rd RVAideMemoire/man/test.multinom.Rd RVAideMemoire/man/MVA.cv.Rd RVAideMemoire/man/dummy.Rd RVAideMemoire/man/MVA.test.Rd RVAideMemoire/man/perm.bartlett.test.Rd RVAideMemoire/man/Anova.clm.Rd RVAideMemoire/man/coord.proj.Rd RVAideMemoire/man/multinomial.test.Rd RVAideMemoire/man/MVA.cor.Rd RVAideMemoire/man/prop.multinom.test.Rd RVAideMemoire/man/cor.multcomp.Rd RVAideMemoire/man/user.cont.Rd RVAideMemoire/man/MVA.anova.Rd RVAideMemoire/man/spearman.cor.multcomp.Rd RVAideMemoire/man/prop.multinom.Rd RVAideMemoire/man/fisher.multcomp.Rd RVAideMemoire/man/dendro.gp.Rd RVAideMemoire/man/plotresid.Rd RVAideMemoire/man/predict.MVA.cv.Rd RVAideMemoire/man/prop.multcomp.Rd RVAideMemoire/man/logis.noise.Rd RVAideMemoire/man/chisq.multcomp.Rd RVAideMemoire/man/adonis.II.Rd RVAideMemoire/man/byf.hist.Rd RVAideMemoire/man/pairwise.CDA.test.Rd RVAideMemoire/man/pcor.test.Rd RVAideMemoire/man/PLSDA.VIP.Rd RVAideMemoire/man/G.bintest.Rd RVAideMemoire/man/byf.shapiro.Rd RVAideMemoire/man/pairwise.perm.manova.Rd

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