Testing and Plotting Procedures for Biostatistics

adonis.II | Type II permutation MANOVA using distance matrices |

Anova.clm | Anova Tables for Cumulative Link (Mixed) Models |

back.emmeans | Back-transformation of EMMeans |

bootstrap | Bootstrap |

byf.hist | Histogram for factor levels |

byf.mqqnorm | QQ-plot for factor levels |

byf.mshapiro | Shapiro-Wilk test for factor levels |

byf.qqnorm | QQ-plot for factor levels |

byf.shapiro | Shapiro-Wilk test for factor levels |

CDA.cv | Cross validation |

CDA.test | Significance test for CDA |

cdf.discrete | Cumulative Distribution Function of a known discrete... |

chisq.bin.exp | Expected counts for comparison of response probabilities to... |

chisq.bintest | Pearson's Chi-squared test for binary variables |

chisq.exp | Expected counts for comparison of proportions to given values |

chisq.multcomp | Pairwise comparisons after a chi-squared goodness-of-fit test |

chisq.theo.bintest | Pearson's Chi-squared test for comparison of response... |

chisq.theo.multcomp | Pairwise comparisons after a chi-squared test for given... |

cochran.qtest | Cochran's Q test |

cond.multinom | Condition number of the Hessian matrix of a multinomial... |

coord.proj | Coordinates of projected points |

cor.2comp | Comparison of 2 Pearson's linear correlation coefficients |

cor.conf | Equality of a Pearson's linear correlation coefficient to a... |

cor.multcomp | Comparison of several Pearson's linear correlation... |

cov.test | Significance test for the covariance between two datasets |

cox.resid | Martingale residuals of a Cox model |

cramer | Cramer's association coefficient |

cramer.test | Cramer's association coefficient |

cv | Coefficient of variation |

CvM.test | Two-sample Cramer-von Mises test |

dendro.gp | Dendrogram and number of groups to be chosen |

deprecated | Deprecated functions in RVAideMemoire package |

DIABLO.cv | Cross validation |

DIABLO.test | Significance test based on cross-validation |

dummy | Dummy responses |

dunn.test | Dunn's test |

fisher.bintest | Fisher's exact test for binary variables |

fisher.multcomp | Pairwise comparisons using Fisher's exact test |

fp.test | Fligner-Policello test |

G.bintest | G-test for binary variables |

G.multcomp | Pairwise comparisons after a G-test |

GPA.test | Significance test for GPA |

G.test | G-test |

G.theo.multcomp | Pairwise comparisons after a G-test for given probabilities |

ind.contrib | Individual contributions in regression |

least.rect | Least rectangles linear regression |

loc.slp | Slope of a hand-defined line |

logis.fit | Graphical adujstment of a simple binary logistic regression... |

logis.noise | Creating a nls model for logistic regression from fitted... |

mod | Mode |

mood.medtest | Mood's median test |

mqqnorm | Multivariate normality QQ-Plot |

mshapiro.test | Shapiro-Wilk multivariate normality test |

multinomial.multcomp | Pairwise comparisons after an exact multinomial test |

multinomial.test | Exact multinomial test |

multinomial.theo.multcomp | Pairwise comparisons after an exact multinomial test for... |

multtest.cor | Univariate correlation test for multiple variables |

multtest.gp | Univariate comparison of groups for multiple variables |

MVA.anova | Type II permutation test for constrained multivariate... |

MVA.biplot | Biplot of multivariate analyses |

MVA.cmv | Cross model validation |

MVA.cor | Correlations of multivariate analyses |

MVA.corplot | Correlation circle of multivariate analyses |

MVA.cv | Cross validation |

MVA.load | Loadings of multivariate analyses |

MVA.loadplot | Loading plot of multivariate analyses |

MVA.pairplot | Paired plot of multivariate analyses |

MVA.plot | Plotting of multivariate analyses |

MVA.scoreplot | Score plot of multivariate analyses |

MVA.scores | Scores of multivariate analyses |

MVA.synt | Synthesis quality of multivariate analyses |

MVA.test | Significance test based on cross (model) validation |

MVA.trajplot | Trajectory plot of multivariate analyses |

ord.rw | Re-computation of an ordination using given row weights |

OR.multinom | Odds-ratio (multinomial regression) |

overdisp.glmer | Estimation of overdispersion with 'glmer' models |

pairwise.CDA.test | Pairwise comparisons for CDA |

pairwise.factorfit | Pairwise comparisons of groups displayed on a factorial map |

pairwise.G.test | Pairwise comparisons for proportions using G-tests |

pairwise.mood.medtest | Pairwise Mood's median tests |

pairwise.MVA.test | Pairwise permutation tests based on cross (model) validation |

pairwise.perm.manova | Pairwise permutation MANOVAs |

pairwise.perm.t.test | Pairwise permutation t tests |

pairwise.perm.var.test | Pairwise permutation F tests |

pairwise.to.groups | Letter summary of similarities and differences |

pairwise.var.test | Pairwise F tests |

pcor | (Semi-)Partial correlation |

pcor.test | Tests for (semi-)partial association/correlation between... |

perm.anova | Permutation Analysis of Variance |

perm.bartlett.test | Permutation Bartlett's test of homogeneity of variances |

perm.cor.test | Permutation Pearson's correlation test |

perm.t.test | Permutation Student's t-test |

perm.var.test | Permutation F test to compare two variances |

plotresid | Simple analysis of model residuals |

plotsurvivors | Survivor curve |

PLSDA.VIP | Variable Importance in the Projection (VIP) |

predict.CDA.cv | Predict method for cross-validated CDA submodels |

predict.coadisc | Predict method for CDA |

predict.MVA.cv | Predict method for cross-validated submodels |

prop.bin.multcomp | Pairwise comparisons after a test for given probabilities |

prop.multcomp | Pairwise comparisons after a test for given proportions |

prop.multinom | Proportions and standard errors |

prop.multinom.test | Wald tests for comparison of proportions |

rating.emmeans | EMMeans for Cumulative Link (Mixed) Models |

rating.prob | Observed rating frequencies |

reg.ci | Confidence intervals of a simple linear regression |

RVAideMemoire-package | Testing and Plotting Procedures for Biostatistics |

scat.cr | "Correlation" of variables to axes in MCA or mix analyses |

se | Standard error |

seq2 | Sequence generation |

spearman.ci | Confidence interval of a Spearman's rank correlation... |

spearman.cor.multcomp | Comparison of several Spearman's rank correlation... |

splitf | Divide into groups respecting relative proportions |

stand | Standardization of a data frame based on another data frame |

test.multinom | Significance tests of coefficients (multinomial regression) |

to.dudi | Synthesis quality of multivariate analyses |

user.cont | User defined contrasts for EMMeans |

wald.ptheo.multinom.test | Wald tests for comparison of proportions to theoretical... |

wald.ptheo.test | Wald test for comparison of a proportion to a theoretical... |

wilcox.paired.multcomp | Non parametric pairwise comparisons for paired data |

wilcox.signtest | Wilcoxon sign test |

wmean | Weighted arithmetic mean |

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