RVtests: Rare Variant Tests

Use multiple regression methods to test rare variants association with disease traits.

Author
C. Xu, and C. M. Greenwood
Date of publication
2013-05-28 07:40:45
Maintainer
C. Xu <changjiang.xu@mail.mcgill.ca>
License
GPL (>= 2)
Version
1.2

View on CRAN

Man pages

count2geno
Transforming genotype counts to genotype codes
geno2count
Transforming genotype codes matrix to genotype counts
LASSO
LASSO for Rare Variant Tests
PCR
Principal Components Regression for RV tests
PLS
Partial Least Squares Regression for RV tests
RR
Ridge Regression for RV Tests
RVtests-package
Rare Variants Tests
sample.cgeno
Genotype Counts dataset
SPLS
Sparse PLS for RV Tests
VTWOD
VT and WOD for RV Tests

Files in this package

RVtests
RVtests/MD5
RVtests/R
RVtests/R/VTWOD.R
RVtests/R/SPLS.R
RVtests/R/RR.R
RVtests/R/PLS.R
RVtests/R/PCR.R
RVtests/R/LASSO.R
RVtests/R/geno2count.R
RVtests/R/count2geno.R
RVtests/NAMESPACE
RVtests/man
RVtests/man/VTWOD.Rd
RVtests/man/SPLS.Rd
RVtests/man/sample.cgeno.Rd
RVtests/man/RVtests-package.Rd
RVtests/man/RR.Rd
RVtests/man/PLS.Rd
RVtests/man/PCR.Rd
RVtests/man/LASSO.Rd
RVtests/man/geno2count.Rd
RVtests/man/count2geno.Rd
RVtests/DESCRIPTION
RVtests/data
RVtests/data/sample.cgeno.rda