sample.cgeno: Genotype Counts dataset

In RVtests: Rare Variant Tests

Description

A list of genotype counts, phenotype, and polyphen weight

Usage

data(sample.cgeno)

Format

The format is: List of 3 $ cgeno :'data.frame': 960 obs. of 3 variables: ..$ indid: int [1:960] 16929 18167 18168 28671 31308 32037 33182 49716 53138 13206 ... ..$ snpid: int [1:960] 57548466 57548466 57548466 57548466 57548466 57548466 57548466 57548466 57548466 57550649 ... ..$ count: int [1:960] 1 1 1 1 1 1 1 1 1 1 ... $ phen :'data.frame': 262 obs. of 2 variables: ..$ indid: int [1:262] 32 90 101 109 129 133 225 236 253 349 ... ..$ trait: num [1:262] 0.128 0.166 0.884 0.929 0.195 ... $ polyphen.weight:'data.frame': 71 obs. of 2 variables: ..$ snpid : int [1:71] 57548364 57548466 57550649 57550666 57556205 57556220 57556236 57567762 57569339 57569466 ... ..$ weight: num [1:71] 0.5 0.5 0.5 0.5 0.055 0 0.706 0.5 0.995 0.5 ...

Details

The dataset was used in comparing VT and WOD methods.

Examples

data(sample.cgeno)
str(sample.cgeno) 

RVtests documentation built on May 1, 2019, 9:51 p.m.