add_hpd_range: Add HPD (Highest Posterior Density) range to a tree plot
In Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization
View source: R/support-labels.R
add_hpd_range R Documentation
Add HPD (Highest Posterior Density) range to a tree plot
Description
Uses ggtree::geom_range() to display horizontal uncertainty bars
on internal nodes. Requires a node.data data frame attached to the
tree with a HPD column (list column of c(lower, upper) vectors).
Usage
add_hpd_range(p, tree, color = "firebrick")
Arguments
p
ggplot object
tree
phylo object (with node.data containing HPD annotations)
color
Color for HPD bars. Default: "firebrick".
Value
ggplot object
Rclade documentation built on Sept. 26, 2026, 5:07 p.m.
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View source: R/support-labels.R
| add_hpd_range | R Documentation |
Add HPD (Highest Posterior Density) range to a tree plot
Description
Uses ggtree::geom_range() to display horizontal uncertainty bars
on internal nodes. Requires a node.data data frame attached to the
tree with a HPD column (list column of c(lower, upper) vectors).
Usage
add_hpd_range(p, tree, color = "firebrick")
Arguments
p |
ggplot object |
tree |
phylo object (with node.data containing HPD annotations) |
color |
Color for HPD bars. Default: "firebrick". |
Value
ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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