RcmdrPlugin.depthTools: R commander Depth Tools Plug-In

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This package provides an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.

Author
Sara Lopez-Pintado <sl2929@columbia.edu> and Aurora Torrente <etorrent@est-econ.uc3m.es>.
Date of publication
2013-06-13 18:17:01
Maintainer
Aurora Torrente <etorrent@est-econ.uc3m.es>
License
GPL (>= 2)
Version
1.3

View on CRAN

Man pages

computeMBD
Computation of the Modified Band Depth in R-commander
computeScaleCurve
Computation and Representation of the Scale Curve
computeTmean
Modified Band Depth-Based Alpha Trimmed Mean
plotCentralCurves
Plot of the p Percent Most Central Curves of a Dataset
RcmdrPlugin.depthTools-internal
Internal RcmdrPlugin.depthTools objects
RcmdrPlugin.depthTools-package
Graphical User Interface for depthTools
runDS
Distance to the Trimmed Mean Classification Method
runRtest
Rank Test Based on the Modified Band Depth
runTAD
Weighted Trimmed Mean Distance Classification Method

Files in this package

RcmdrPlugin.depthTools
RcmdrPlugin.depthTools/MD5
RcmdrPlugin.depthTools/R
RcmdrPlugin.depthTools/R/RcmdrPlugin.depthTools.R
RcmdrPlugin.depthTools/NAMESPACE
RcmdrPlugin.depthTools/man
RcmdrPlugin.depthTools/man/runTAD.Rd
RcmdrPlugin.depthTools/man/runRtest.Rd
RcmdrPlugin.depthTools/man/runDS.Rd
RcmdrPlugin.depthTools/man/RcmdrPlugin.depthTools-package.Rd
RcmdrPlugin.depthTools/man/RcmdrPlugin.depthTools-internal.Rd
RcmdrPlugin.depthTools/man/plotCentralCurves.Rd
RcmdrPlugin.depthTools/man/computeTmean.Rd
RcmdrPlugin.depthTools/man/computeScaleCurve.Rd
RcmdrPlugin.depthTools/man/computeMBD.Rd
RcmdrPlugin.depthTools/inst
RcmdrPlugin.depthTools/inst/etc
RcmdrPlugin.depthTools/inst/etc/menus.txt
RcmdrPlugin.depthTools/DESCRIPTION