Man pages for Rgb
The R Genome Browser
| Annotation | Annotation track constructors |
| crossable-class | Class '"crossable"' |
| drawable-class | Class '"drawable"' |
| drawable.list | Drawable list constructor |
| drawable.list-class | Class '"drawable.list"' |
| draw.bg | Background for track plots |
| draw.boxes | Boxes plot of a track |
| draw.density | Two-dimensional density plot of a track |
| draw.hist | Histogram plot of a track |
| draw.pileup | Pileup plot of a BAM track |
| draw.points | Scatter plot of a track |
| draw.seq | Plot a sequence of nucleotides |
| draw.steps | Stairway plot of a track |
| findDrawables | Find drawable objects in memory |
| hsBands | Homo sapiens GRCh37 chromosome banding |
| hsGenes | Subset of Homo sapiens GRCh37 genes |
| istrack_subtrack_sizetrack | Extract elements within a genomic window |
| read.gtf | Parses a GTF2 file |
| refTable-class | Class '"refTable"' |
| refTable-constructor | refTable class constructor |
| saveRDT | Single refTable object storage |
| segMerge | Merges consecutive segments |
| segOverlap | Merges overlapping segments |
| singlePlot | Whole genome plot of a drawable list |
| sliceable-class | Class '"sliceable"' |
| tk.browse | R Genome browser |
| tk.convert | RDT file conversion |
| tk.tracks | Track management for Genome browser |
| tk.utils | Tk interface utilities |
| track.bam-class | Class '"track.bam"' |
| track.bands-class | Class '"track.bands"' |
| track.CNV-class | Class '"track.CNV"' |
| track-constructors | Track constructors |
| track.exons-class | Class '"track.exons"' |
| track.fasta-class | Class '"track.fasta"' |
| track.fasta-constructors | Track constructors for FASTA files |
| track.genes-class | Class '"track.genes"' |
| track.table-class | Class '"track.table"' |
| yline | Compute Y line to avoid collision |
