sliceable-class: Class '"sliceable"'

In Rgb: The R Genome Browser

Class "sliceable"

Description

Reference classes extending this virtual class must have a slice method, as a generic draw method based on it is provided.

Extends

Class drawable, directly.

All reference classes extend and inherit methods from envRefClass.

Fields

The following fields are inherited (from the corresponding class):

• name (drawable)

• parameters (drawable)

Methods

slice(chrom, start, end):

[Virtual method]
Extract elements in the specified window, in a format suitable to draw().
- chrom : single integer, numeric or character value, the chromosomal location. NA is not handled.
- start : single integer or numeric value, inferior boundary of the window. NA is not handled.
- end : single integer or numeric value, superior boundary of the window. NA is not handled.

The following methods are inherited (from the corresponding class):

• callParams (drawable)

• callSuper (envRefClass)

• check (drawable)

• chromosomes (drawable)

• copy (envRefClass)

• defaultParams (drawable, overloaded)

• draw (drawable, overloaded)

• export (envRefClass)

• field (envRefClass)

• fix.param (drawable)

• getChromEnd (drawable, overloaded)

• getClass (envRefClass)

• getName (drawable)

• getParam (drawable)

• getRefClass (envRefClass)

• import (envRefClass)

• initFields (envRefClass)

• initialize (drawable)

• setName (drawable)

• setParam (drawable)

• show (drawable, overloaded)

• trace (envRefClass)

• untrace (envRefClass)

• usingMethods (envRefClass)

Author(s)

Sylvain Mareschal

See Also

drawable, crossable, cghRA.array

Rgb documentation built on Aug. 18, 2023, 5:05 p.m.