Rmagic: MAGIC - Markov Affinity-Based Graph Imputation of Cells

MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) <DOI:10.1016/j.cell.2018.05.061>.

Getting started

Package details

AuthorDavid van Dijk [aut], Scott Gigante [cre] (<https://orcid.org/0000-0002-4544-2764>)
MaintainerScott Gigante <scott.gigante@yale.edu>
LicenseGPL-2 | file LICENSE
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the Rmagic package in your browser

Any scripts or data that you put into this service are public.

Rmagic documentation built on Nov. 21, 2019, 5:07 p.m.