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Rmagic: MAGIC - Markov Affinity-Based Graph Imputation of Cells
MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) <DOI:10.1016/j.cell.2018.05.061>.
Getting started
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Package details |
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| Author | David van Dijk [aut], Scott Gigante [cre] (<https://orcid.org/0000-0002-4544-2764>) |
| Maintainer | Scott Gigante <scott.gigante@yale.edu> |
| License | GPL-2 | file LICENSE |
| Version | 2.0.3 |
| Package repository | View on CRAN |
| Installation |
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