ggplot: Convert a MAGIC object to a data.frame for ggplot
In Rmagic: MAGIC - Markov Affinity-Based Graph Imputation of Cells
Description
Usage
Arguments
Examples
Description
Passes the smoothed data matrix to ggplot
Usage
1
2
Arguments
data
A fitted MAGIC object
...
Arguments for ggplot()
Examples
1
2
3
4
5
6
7
8
if (pymagic_is_available() && require(ggplot2)) {
data(magic_testdata)
data_magic <- magic(magic_testdata, genes=c("VIM", "CDH1", "ZEB1"))
ggplot(data_magic, aes(VIM, CDH1, colour=ZEB1)) +
geom_point()
}
Rmagic documentation built on Nov. 21, 2019, 5:07 p.m.
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Description Usage Arguments Examples
Description
Passes the smoothed data matrix to ggplot
Usage
1 2 |
Arguments
data |
A fitted MAGIC object |
... |
Arguments for ggplot() |
Examples
1 2 3 4 5 6 7 8 | if (pymagic_is_available() && require(ggplot2)) {
data(magic_testdata)
data_magic <- magic(magic_testdata, genes=c("VIM", "CDH1", "ZEB1"))
ggplot(data_magic, aes(VIM, CDH1, colour=ZEB1)) +
geom_point()
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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