Man pages for Rnets
Resistance Relationship Networks using Graphical LASSO
| Assign_Emetadata | Assign_Emetadata - Methods for assigning network edge... |
| Assign_Vmetadata | Assign_Vmetadata - Methods for assigning network vertex... |
| BootstrapEdgeDistn | Penalized Partial Correlation Distribution Estimates |
| Clean_Sigma | Clean_Sigma function |
| CompareMRF_T2 | Comparison of two MRFs using Hotellings T2 |
| Convert_MICs | Convert_MICs - Processing raw AST data |
| degree | Extended igraph methods |
| degree-rnetBasic | degree.RnetBasic() - See igraph documentation for full... |
| dot-Assign_Layout_Matrix | Hidden function for assigning layout matrix |
| dot-Gen_R | .Gen_R - internal methods for generating Rnets. |
| E_ATTRS | Sample Edge Attributes |
| EC_COORDS | Example Vertex coordinates |
| edge_density | edge_density generic |
| edge_density-rnetBasic | edge_density.RnetBasic() - See igraph documentation for full... |
| Estimate_pCorrs | Estimation of partial correlation matrix from precision... |
| gorder | gorder generic |
| gorder-rnetBasic | gorder.RnetBasic() - See igraph documentation for full... |
| gsize | gsize generic |
| gsize-rnetBasic | gsize.RnetBasic() - See igraph documentation for full... |
| image.edge_heatmap | image() method for plotting Rnet heatmaps |
| L1Selection | L1 Selection for Rnets |
| modularity-rnetBasic | modularity.RnetBasic() - See igraph documentation for full... |
| NARMS_EC_DATA | E. coli Isolate information from Nat'l Antimicrobial... |
| plot-RnetBasic | Plot methods for R-nets |
| plot-rnet.L1.set | plot() method for summarizing L1 StARS section objects |
| Print methods of rnet objects. | |
| Rnet | R-net Methods |
| rnetBasic | An S4 class containg the information of a basic rnet. These... |
| Rnet_Heatmap | Rnet_Heatmap - Function to generate a bitmap figure to... |
| rnetInput | An S4 class for accepting input data common for generating... |
| rnetStrata | An S4 class containing multiple Rnets, each the information... |
| rnetSubset | An S4 class containing the information of an rnet... |
| signed_modularity | Robust Estimator of modularity (Gomez, et al 2009) |
| signed_modularity-igraph | signed_modularity-igraph |
| signed_modularity-matrix | signed_modularity-matrix |
| signed_modularity-rnetBasic | signed_modularity-rnetBasic |
| signed_modularity-rnetMultiStrata | signed_modularity-rnetMultiStrata |
| Sq2Long | Matrix reshaping function |
| summary-L1selection | Summary - L1 selection object |
| summary-mrf_t2 | Summary - MRF comparison with Hotellings T2 |
| summary-rnetBasic | Summary - rnetBasic |
| summary-rnetStrata | Summary - rnetStrata |
| summary-rnetSubset | Summary - rnetSubset |
| tkplot | tkplot generic |
| tkplot-rnetBasic | tkplot.RnetBasic() - See igraph documentation for full... |
| V_ATTRS | Sample Vertex Attributes for NARMS_EC_DATA |
