NARMS_EC_DATA: E. coli Isolate information from Nat'l Antimicrobial...

In Rnets: Resistance Relationship Networks using Graphical LASSO

Description

A dataset of isolate resistance and metadata for 14,418 E. coli isolates from commercial chicken breasts and chicken carcasses rinsates. Resistance data stored log2 transformed minimum inhibitory concentration (MIC). Columns beyond SAMPLE_ID, Year, and SOURCE are log2(MICs). See source for key for antimicrobials.

Usage

data(NARMS_EC_DATA)

Format

A dataframe from with 14,418 rows and 28 columns

SAMPLE_ID

NARMS-assigned isolate code

Year

Year collected

SOURCE

Source of isolate: Retail (chicken breasts) or Slaughter (carcass rinsates)

AMC - TIO

log2(MIC) of respective antibiotics (see source for drug codes)

Source

https://www.fda.gov/AnimalVeterinary/SafetyHealth/AntimicrobialResistance/NationalAntimicrobialResistanceMonitoringSystem/ucm416741.htm

Rnets documentation built on July 23, 2019, 9:04 a.m.