NEWS.md

In Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees

Rogue v2.1.6

• Legend annotations in documentation.
• Disable parallel evaluation by default in TipInstability(), adding parallel parameter to allow user to override.
• Use format string in REprintf().

Rogue v2.1.5

• Call C functions using symbols, not strings.

Rogue v2.1.4

• C2X compliant function prototypes.

• Remove unused sprintf() calls.

Rogue v2.1.3

• ColByStability() gains pal argument to allow specification of custom palettes.

Rogue v2.1.2

• Faster rogue detection when edge lengths provided, per report by Joe Keating.

• Don't list neverDrop in QuickRogue(fullSeq = TRUE).

Rogue v2.1.1

• Handle ColByStability(trees = NULL).

Rogue v2.1.0

• Early termination of QuickRogue() when no further improvement possible.

• Cophenetic() renamed to the more accurate GraphGeodesic().

• Calculate information content of consensus trees with p > 0.5 (#15).

• Improve support for multiPhylo objects.

• New vignette detailing rogue detection with Bayesian tree samples.

Rogue v2.0.0

• Information theoretic rogue detection (per Smith, 2022).

Rogue v1.0.0

• R interface to RogueNaRok.

Rogue documentation built on May 29, 2024, 5:05 a.m.