generef: Expression level of candidate reference genes

In SARP.compo: Network-Based Interpretation of Changes in Compositional Data

Expression level of candidate reference genes

Description

This dataset gives the expression level of 30 different candidate reference genes, in control subjects and in subjects with bipolar disorder.

Usage

data(generef)

Format

A data frame with 40 rows and 32 columns. Each row gives the results and characteristics of a given patient. Columns 3 to 32 give the average expression level of the gene whose name is the column name, for the given patient. Columns are sorted in alphabetical order of the gene name. Values are expressed as Cq (Ct) and were obtained through qRT-PCR. RNAs were extracted on lymphoblastoid cell line culture. Cq are the average of three technical replicates, after eventual removal of outliers.

ID	factor	Patient identifier
Group	factor	Patient group (control or having bipolar disorders)
ATCB	numeric	Cq for gene ATCB
...	numeric	Cq for gene ...
YWHAZ	numeric	Cq for gene YWHAZ

Source

Experimental data kindly provided by Calypso Nepost & Cynthia Marie-Claire, UMR-S 1144, INSERM-Paris Descartes-Paris Diderot

SARP.compo documentation built on May 29, 2024, 2:25 a.m.