find_neighbors2: find_neighbors2.
In SC.MEB: Spatial Clustering with Hidden Markov Random Field using Empirical Bayes

find_neighbors2 was used to find the neighborhood of spot.

1	find_neighbors2(sce, platform)

`sce`	is a SingleCellExperiment object containing PCA and position informatin.
`platform`	is the name of spatial transcriptomic platform. Specify 'Visium' for hex lattice geometry or 'ST' for square lattice geometry. Specifying this parameter is optional as this information is included in their metadata.

find_neighbors2 was used to find the neighborhood of spot.

a sparse matrix recording the information of neighborhood.

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data(sce)
platform = "ST"
Adj <- find_neighbors2(sce, platform)

SC.MEB documentation built on Oct. 8, 2021, 9:08 a.m.

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