sce: A simulated SingleCellExperiment

In SC.MEB: Spatial Clustering with Hidden Markov Random Field using Empirical Bayes

Description

A dataset of SingleCellExperiment

Usage

data(sce)

Format

It is a SingleCellExperiment object with gene expression and meta information

References

Amezquita R A, Lun A T L, Becht E, et al. Orchestrating single-cell analysis with Bioconductor[J]. Nature methods, 2020, 17(2): 137-145.

Examples

## find the neighborhood of spots in SingleCellExperiment
data(sce)
out = find_neighbors2(sce, "ST")

SC.MEB documentation built on Oct. 8, 2021, 9:08 a.m.