CalcuSCIR | R Documentation |
Calculate SCIntRuler
CalcuSCIR(fullcluster, seuratlist, testres, p = 0.1)
fullcluster |
A list of clusters that generated by the function GetCluster() |
seuratlist |
A list of Seurat objects, usually can be got by SplitObject(). |
testres |
Result from function PermTest() |
p |
P-value that will be used as the cut-off, default value is 0.1 |
SCIntRuler
data(sim_result)
data(sim_data_sce)
sim_data <- SCEtoSeurat(sim_data_sce)
seuratlist <- Seurat::SplitObject(sim_data, split.by = "Study")
CalcuSCIR(sim_result[[1]], seuratlist, sim_result[[4]])
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