PlotSCIR: Plot SCIntRuler
In SCIntRuler: Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

PlotSCIR

R Documentation

Plot SCIntRuler

Description

Plot SCIntRuler

Usage

PlotSCIR(fullcluster, seuratlist, testres, legendtitle = NULL, title = NULL)

Arguments

`fullcluster`	A list of clusters that generated by the function GetCluster.
`seuratlist`	A list of Seurat objects, usually can be got by SplitObject().
`testres`	Result from function PermTest()
`legendtitle`	Title of legend, default to be NULL
`title`	Title of figure, default to be NULL

Value

A ggplot2 object

Examples


data(sim_data_sce)
data(sim_result)
sim_data <- SCEtoSeurat(sim_data_sce)
seuratlist <- Seurat::SplitObject(sim_data, split.by = "Study")
PlotSCIR(sim_result[[1]], seuratlist, sim_result[[4]])

SCIntRuler documentation built on Sept. 11, 2024, 5:22 p.m.