API for SCpubr
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| `%!in%` | Source code |
| add_cross | Source code |
| add_info | Source code |
| add_scale | Source code |
| add_star | Source code |
| add_tick | Source code |
| add_warning | Source code |
| check_Assay5 | Source code |
| check_Seurat | Source code |
| check_and_set_assay | Source code |
| check_and_set_dimensions | Source code |
| check_and_set_reduction | Source code |
| check_and_set_slot | Source code |
| check_colors | Source code |
| check_consistency_colors_and_names | Source code |
| check_cutoffs | Source code |
| check_feature | Source code |
| check_group_by | Source code |
| check_identity | Source code |
| check_length | Source code |
| check_limits | Source code |
| check_parameters | Source code |
| check_suggests | Source code |
| check_type | Source code |
| compute_continuous_palette | Source code |
| compute_enrichment_scores | Source code |
| compute_factor_levels | Source code |
| compute_scale_limits | Source code |
| compute_scales | Source code |
| compute_umap_layer | Source code |
| crayon_body | Source code |
| crayon_key | Source code |
| do_AlluvialPlot | Man page Source code |
| do_BarPlot | Man page Source code |
| do_BeeSwarmPlot | Man page Source code |
| do_BoxPlot | Man page Source code |
| do_CellularStatesPlot | Man page Source code |
| do_ChordDiagramPlot | Man page Source code |
| do_ColorPalette | Man page Source code |
| do_CopyNumberVariantPlot | Man page Source code |
| do_CorrelationPlot | Man page Source code |
| do_DimPlot | Man page Source code |
| do_DotPlot | Man page Source code |
| do_EnrichmentHeatmap | Man page Source code |
| do_ExpressionHeatmap | Man page Source code |
| do_FeaturePlot | Man page Source code |
| do_FunctionalAnnotationPlot | Man page Source code |
| do_GeyserPlot | Man page Source code |
| do_GroupedGOTermPlot | Man page Source code |
| do_GroupedGO_matrices | Source code |
| do_GroupwiseDEPlot | Man page Source code |
| do_NebulosaPlot | Man page Source code |
| do_PathwayActivityPlot | Man page Source code |
| do_RidgePlot | Man page Source code |
| do_TFActivityPlot | Man page Source code |
| do_TermEnrichmentPlot | Man page Source code |
| do_ViolinPlot | Man page Source code |
| do_VolcanoPlot | Man page Source code |
| doc_function | Man page Source code |
| generate_color_scale | Source code |
| get_SCpubr_colors | Source code |
| get_axis_parameters | Source code |
| get_data_column | Source code |
| get_data_column_in_context | Source code |
| guide_axis_label_trans | Source code |
| handle_axis | Source code |
| human_chr_locations | Man page |
| modify_continuous_legend | Source code |
| modify_string | Source code |
| named_list | Man page Source code |
| named_vector | Man page Source code |
| one_one_norm | Source code |
| package_report | Man page Source code |
| prepare_ggplot_alluvial_plot | Source code |
| range_norm | Source code |
| remove_duplicated_features | Source code |
| remove_not_found_features | Source code |
| return_dependencies | Source code |
| zero_one_norm | Source code |
