Files in SCpubr
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/do_ColorPalette.R
R/do_LigandReceptorPlot.R
R/do_BoxPlot.R
R/do_BarPlot.R
R/do_RidgePlot.R
R/do_PathwayActivityHeatmap.R
R/do_TermEnrichmentPlot.R
R/data.R
R/do_NebulosaPlot.R
R/do_RankedEnrichmentHeatmap.R
R/do_VolcanoPlot.R
R/do_MetadataHeatmap.R
R/do_ColorBlindCheck.R
R/do_CNVHeatmap.R
R/do_TFActivityHeatmap.R
R/do_ActivityHeatmap.R
R/do_ExpressionHeatmap.R
R/do_WafflePlot.R
R/do_EnrichmentHeatmap.R
R/do_CorrelationHeatmap.R
R/do_FeaturePlot.R
R/do_StripPlot.R
R/do_BeeSwarmPlot.R
R/do_LoadingsHeatmap.R
R/zzz.R
R/do_GroupwiseDEHeatmap.R
R/do_SCExpressionHeatmap.R
R/globals.R
R/do_SCEnrichmentHeatmap.R
R/do_DotPlot.R
R/do_ChordDiagramPlot.R
R/do_ViolinPlot.R
R/do_AlluvialPlot.R
R/do_DimPlot.R
R/utils.R
R/do_CellularStatesPlot.R
R/do_RankedExpressionHeatmap.R
inst/CITATION
inst/doc/reference_manual.html
inst/doc/reference_manual.Rmd
inst/extdata/infercnv_object_example.rds
inst/extdata/de_genes_example.rds
inst/extdata/metacell_mapping_example.rds
inst/extdata/dorothea_activities_example.rds
inst/extdata/genes_example.rds
inst/extdata/liana_output_example.rds
inst/extdata/infercnv_object_metacells_example.rds
inst/extdata/seurat_dataset_example.rds
inst/extdata/progeny_activities_example.rds
inst/extdata/enriched_terms_example.rds
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-do_ViolinPlot.R
tests/testthat/test-do_BarPlot.R
tests/testthat/test-do_VolcanoPlot.R
tests/testthat/test-do_GroupwiseDEHeatmap.R
tests/testthat/test-utils.R
tests/testthat/test-do_ExpressionHeatmap.R
tests/testthat/test-do_TermEnrichmentPlot.R
tests/testthat/test-do_BoxPlot.R
tests/testthat/test-do_NebulosaPlot.R
tests/testthat/test-do_PathwayActivityHeatmap.R
tests/testthat/test-do_SCEnrichmentHeatmap.R
tests/testthat/test-do_WafflePlot.R
tests/testthat/test-do_DimPlot.R
tests/testthat/test-do_RidgePlot.R
tests/testthat/test-do_MetadataHeatmap.R
tests/testthat/test-do_CNVHeatmap.R
tests/testthat/test-do_ActivityHeatmap.R
tests/testthat/test-do_StripPlot.R
tests/testthat/test-do_CellularStatesPlot.R
tests/testthat/test-do_DotPlot.R
tests/testthat/test-do_CorrelationHeatmap.R
tests/testthat/test-do_LigandReceptorPlot.R
tests/testthat/test-do_TFActivityHeatmap.R
tests/testthat/test-do_RankedExpressionHeatmap.R
tests/testthat/test-do_RankedEnrichmentHeatmap.R
tests/testthat/test-do_ColorPalette.R
tests/testthat/test-do_ChordDiagramPlot.R
tests/testthat/test-do_LoadingsHeatmap.R
tests/testthat/test-do_AlluvialPlot.R
tests/testthat/setup.R
tests/testthat/test-do_ColorBlindCheck.R
tests/testthat/test-do_SCExpressionHeatmap.R
tests/testthat/test-do_EnrichmentHeatmap.R
tests/testthat/test-do_BeeSwarmPlot.R
tests/testthat/test-do_FeaturePlot.R
vignettes/reference_manual.Rmd
data/human_chr_locations.rda
man/do_TermEnrichmentPlot.Rd
man/named_vector.Rd
man/do_RidgePlot.Rd
man/do_LigandReceptorPlot.Rd
man/do_CorrelationHeatmap.Rd
man/do_DimPlot.Rd
man/do_ColorPalette.Rd
man/do_DotPlot.Rd
man/do_CellularStatesPlot.Rd
man/do_PathwayActivityHeatmap.Rd
man/do_WafflePlot.Rd
man/named_list.Rd
man/do_ChordDiagramPlot.Rd
man/human_chr_locations.Rd
man/do_ActivityHeatmap.Rd
man/doc_function.Rd
man/do_LoadingsHeatmap.Rd
man/do_SCEnrichmentHeatmap.Rd
man/do_GroupwiseDEHeatmap.Rd
man/do_PackageReport.Rd
man/do_RankedExpressionHeatmap.Rd
man/do_ExpressionHeatmap.Rd
man/do_VolcanoPlot.Rd
man/do_EnrichmentHeatmap.Rd
man/do_MetadataHeatmap.Rd
man/do_SCExpressionHeatmap.Rd
man/do_FeaturePlot.Rd
man/do_TFActivityHeatmap.Rd
man/do_CNVHeatmap.Rd
man/do_ViolinPlot.Rd
man/do_NebulosaPlot.Rd
man/do_StripPlot.Rd
man/do_ColorBlindCheck.Rd
man/do_BoxPlot.Rd
man/do_AlluvialPlot.Rd
man/do_BeeSwarmPlot.Rd
man/do_BarPlot.Rd
man/do_RankedEnrichmentHeatmap.Rd
man/examples/examples_do_RankedExpressionHeatmap.R
man/examples/examples_do_PathwayActivityHeatmap.R
man/examples/examples_do_ActivityHeatmap.R
man/examples/examples_do_ColorPalette.R
man/examples/examples_do_RankedEnrichmentHeatmap.R
man/examples/examples_do_StripPlot.R
man/examples/examples_do_SCExpressionHeatmap.R
man/examples/examples_do_BarPlot.R
man/examples/examples_do_BeeSwarmPlot.R
man/examples/examples_do_ExpressionHeatmap.R
man/examples/examples_do_CorrelationHeatmap.R
man/examples/examples_do_LoadingsHeatmap.R
man/examples/examples_do_EnrichmentHeatmap.R
man/examples/examples_do_ColorBlindCheck.R
man/examples/examples_do_WafflePlot.R
man/examples/examples_do_RidgePlot.R
man/examples/examples_do_ViolinPlot.R
man/examples/examples_do_VolcanoPlot.R
man/examples/examples_do_ChordDiagramPlot.R
man/examples/examples_do_AlluvialPlot.R
man/examples/examples_do_SCEnrichmentHeatmap.R
man/examples/examples_do_DotPlot.R
man/examples/examples_do_CellularStatesPlot.R
man/examples/examples_do_MetadataHeatmap.R
man/examples/examples_do_BoxPlot.R
man/examples/examples_do_GroupwiseDEHeatmap.R
man/examples/examples_do_CNVHeatmap.R
man/examples/examples_do_TFActivityHeatmap.R
man/examples/examples_do_FeaturePlot.R
man/examples/examples_do_LigandReceptorPlot.R
man/examples/examples_do_TermEnrichmentPlot.R
man/examples/examples_do_DimPlot.R
man/examples/examples_do_NebulosaPlot.R
