SDMTools: Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
Version 1.1-221

This packages provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel methods for comparing models and tracking changes in distributions through time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.. This package was made possible in part by financial support from the Australian Research Council & ARC Research Network for Earth System Science.

Browse man pages Browse package API and functions Browse package files

AuthorJeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie
Date of publication2014-08-05 12:16:01
MaintainerJeremy VanDerWal <jjvanderwal@gmail.com>
LicenseGPL (>= 3)
Version1.1-221
URL http://www.rforge.net/SDMTools/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SDMTools")

Man pages

accuracy: Measures of Model Accuracy
asc2dataframe: Ascii Grid Files to Dataframe and Dataframe to Ascii Grid...
asc.from.raster: Raster conversion functions for adehabitat, raster and sp...
auc: Area Under the Curve of the Reciever Operating Curve
circular.averaging: Circular Averaging based on Vector Averaging
ClassStat: Landscape Class Statistics
COGravity: Centre of Gravity or Mass calculations for spatial data
compare.matrix: Biplot Comparison of Matrices
confusion.matrix: Confusion Matrix
ConnCompLabel: Connected Components Labelling - Unique Patch Labelling
destination: Vincenty Direct Calculation of a Destination
distance: Vincenty Direct Calculation of Distance and Direction
extract.data: Spatial Join of Points with Raster Grids
getXYcoords: Computes the X and Y Coordinates of the Pixels of a Raster...
grid.area: Create a Grid of Cell Areas or Perimeters
grid.info: Grid Information from Geographic (lat lon) Projections
Istat: I Similarity Statistic for Quantifying Niche Overlap
Kappa: Kappa Statistic
lcmw: Least Cost Moving Windows Calculation
legend.gradient: Legend Gradient
omission: Measures of Accuracy
optim.thresh: Estimation of Optimal Threshold Values
PatchStat: Landscape Patch Statistics
pnt.in.poly: Point in Polygon
put.data: Spatial Join of Points with Raster Grids - replace data
quick.map: Quick Map
read.asc: ESRI ASCII Raster File Import And Export
Scalebar: Scalebar for Projected Maps
SigDiff: Identify Regions of Significant Differences
slope: Slope and aspect calculations
wt.mean: Weighted mean, variance and standard deviation calculations
ZonalStat: Landscape Zonal Statistics

Functions

COGravity Man page Source code
ClassStat Man page Source code
ConnCompLabel Man page Source code
ImageDiff Man page Source code
Istat Man page Source code
Kappa Man page Source code
PatchStat Man page Source code
Scalebar Man page Source code
SigDiff Man page Source code
ZonalStat Man page Source code
accuracy Man page Source code
as.asc Man page Source code
asc.from.raster Man page Source code
asc.from.sp Man page Source code
asc2dataframe Man page Source code
aspect Man page Source code
auc Man page Source code
circular.averaging Man page Source code
compare.matrix Man page Source code
confusion.matrix Man page Source code
dataframe2asc Man page Source code
destination Man page Source code
distance Man page Source code
extract.data Man page Source code
getXYcoords Man page
grid.area Man page Source code
grid.info Man page Source code
grid.perimeter Man page Source code
image.asc Man page
lcmw Man page Source code
legend.gradient Man page Source code
omission Man page Source code
optim.thresh Man page Source code
pnt.in.poly Man page Source code
print.asc Man page
prop.correct Man page Source code
put.data Man page Source code
quick.map Man page Source code
raster.from.asc Man page Source code
read.asc Man page Source code
read.asc.gz Man page Source code
sensitivity Man page Source code
slope Man page Source code
sp.from.asc Man page Source code
specificity Man page Source code
vector.averaging Man page Source code
write.asc Man page Source code
write.asc.gz Man page Source code
write.asc2 Man page Source code
write.asc2.gz Man page Source code
wt.mean Man page Source code
wt.sd Man page Source code
wt.var Man page Source code

Files

src
src/writeasciidata.c
src/movewindow.c
src/getmin.c
src/vincenty.geodesics.c
src/patchstats.c
src/ConnectedComponentLabelling.c
src/pointinpolygon.c
src/slope.aspect.c
NAMESPACE
R
R/Istat.R
R/grid.area.R
R/compare.matrix.R
R/asc2dataframe.R
R/asc.from.raster.R
R/getXYcoords.R
R/optim.thresh.R
R/quick.map.r
R/ClassStat.R
R/extract.data.R
R/Scalebar.R
R/confusion.matrix.R
R/circular.averaging.R
R/slope.R
R/destination.R
R/COGravity.R
R/ZonalStat.R
R/omission.R
R/pnt.in.poly.R
R/SigDiff.R
R/ConnCompLabel.R
R/put.data.R
R/Kappa.R
R/legend.gradient.r
R/wt.mean.R
R/read.asc.R
R/accuracy.R
R/auc.R
R/lcmw.R
R/distance.R
R/grid.info.R
R/PatchStat.R
MD5
DESCRIPTION
ChangeLog
man
man/SigDiff.Rd
man/omission.Rd
man/accuracy.Rd
man/legend.gradient.Rd
man/ZonalStat.Rd
man/lcmw.Rd
man/compare.matrix.Rd
man/COGravity.Rd
man/wt.mean.Rd
man/distance.Rd
man/auc.Rd
man/read.asc.Rd
man/Scalebar.Rd
man/circular.averaging.Rd
man/put.data.Rd
man/asc.from.raster.Rd
man/pnt.in.poly.Rd
man/ClassStat.Rd
man/confusion.matrix.Rd
man/grid.info.Rd
man/optim.thresh.Rd
man/ConnCompLabel.Rd
man/Kappa.Rd
man/grid.area.Rd
man/PatchStat.Rd
man/extract.data.Rd
man/getXYcoords.Rd
man/Istat.Rd
man/quick.map.Rd
man/slope.Rd
man/destination.Rd
man/asc2dataframe.Rd
SDMTools documentation built on May 19, 2017, 11:32 p.m.