This packages provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel methods for comparing models and tracking changes in distributions through time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.. This package was made possible in part by financial support from the Australian Research Council & ARC Research Network for Earth System Science.

Author | Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie |

Date of publication | 2014-08-05 12:16:01 |

Maintainer | Jeremy VanDerWal <jjvanderwal@gmail.com> |

License | GPL (>= 3) |

Version | 1.1-221 |

http://www.rforge.net/SDMTools/ |

**accuracy:** Measures of Model Accuracy

**asc2dataframe:** Ascii Grid Files to Dataframe and Dataframe to Ascii Grid...

**asc.from.raster:** Raster conversion functions for adehabitat, raster and sp...

**auc:** Area Under the Curve of the Reciever Operating Curve

**circular.averaging:** Circular Averaging based on Vector Averaging

**ClassStat:** Landscape Class Statistics

**COGravity:** Centre of Gravity or Mass calculations for spatial data

**compare.matrix:** Biplot Comparison of Matrices

**confusion.matrix:** Confusion Matrix

**ConnCompLabel:** Connected Components Labelling - Unique Patch Labelling

**destination:** Vincenty Direct Calculation of a Destination

**distance:** Vincenty Direct Calculation of Distance and Direction

**extract.data:** Spatial Join of Points with Raster Grids

**getXYcoords:** Computes the X and Y Coordinates of the Pixels of a Raster...

**grid.area:** Create a Grid of Cell Areas or Perimeters

**grid.info:** Grid Information from Geographic (lat lon) Projections

**Istat:** I Similarity Statistic for Quantifying Niche Overlap

**Kappa:** Kappa Statistic

**lcmw:** Least Cost Moving Windows Calculation

**legend.gradient:** Legend Gradient

**omission:** Measures of Accuracy

**optim.thresh:** Estimation of Optimal Threshold Values

**PatchStat:** Landscape Patch Statistics

**pnt.in.poly:** Point in Polygon

**put.data:** Spatial Join of Points with Raster Grids - replace data

**quick.map:** Quick Map

**read.asc:** ESRI ASCII Raster File Import And Export

**Scalebar:** Scalebar for Projected Maps

**SigDiff:** Identify Regions of Significant Differences

**slope:** Slope and aspect calculations

**wt.mean:** Weighted mean, variance and standard deviation calculations

**ZonalStat:** Landscape Zonal Statistics

SDMTools

SDMTools/src

SDMTools/src/writeasciidata.c

SDMTools/src/movewindow.c

SDMTools/src/getmin.c

SDMTools/src/vincenty.geodesics.c

SDMTools/src/patchstats.c

SDMTools/src/ConnectedComponentLabelling.c

SDMTools/src/pointinpolygon.c

SDMTools/src/slope.aspect.c

SDMTools/NAMESPACE

SDMTools/R

SDMTools/R/Istat.R
SDMTools/R/grid.area.R
SDMTools/R/compare.matrix.R
SDMTools/R/asc2dataframe.R
SDMTools/R/asc.from.raster.R
SDMTools/R/getXYcoords.R
SDMTools/R/optim.thresh.R
SDMTools/R/quick.map.r

SDMTools/R/ClassStat.R
SDMTools/R/extract.data.R
SDMTools/R/Scalebar.R
SDMTools/R/confusion.matrix.R
SDMTools/R/circular.averaging.R
SDMTools/R/slope.R
SDMTools/R/destination.R
SDMTools/R/COGravity.R
SDMTools/R/ZonalStat.R
SDMTools/R/omission.R
SDMTools/R/pnt.in.poly.R
SDMTools/R/SigDiff.R
SDMTools/R/ConnCompLabel.R
SDMTools/R/put.data.R
SDMTools/R/Kappa.R
SDMTools/R/legend.gradient.r

SDMTools/R/wt.mean.R
SDMTools/R/read.asc.R
SDMTools/R/accuracy.R
SDMTools/R/auc.R
SDMTools/R/lcmw.R
SDMTools/R/distance.R
SDMTools/R/grid.info.R
SDMTools/R/PatchStat.R
SDMTools/MD5

SDMTools/DESCRIPTION

SDMTools/ChangeLog

SDMTools/man

SDMTools/man/SigDiff.Rd
SDMTools/man/omission.Rd
SDMTools/man/accuracy.Rd
SDMTools/man/legend.gradient.Rd
SDMTools/man/ZonalStat.Rd
SDMTools/man/lcmw.Rd
SDMTools/man/compare.matrix.Rd
SDMTools/man/COGravity.Rd
SDMTools/man/wt.mean.Rd
SDMTools/man/distance.Rd
SDMTools/man/auc.Rd
SDMTools/man/read.asc.Rd
SDMTools/man/Scalebar.Rd
SDMTools/man/circular.averaging.Rd
SDMTools/man/put.data.Rd
SDMTools/man/asc.from.raster.Rd
SDMTools/man/pnt.in.poly.Rd
SDMTools/man/ClassStat.Rd
SDMTools/man/confusion.matrix.Rd
SDMTools/man/grid.info.Rd
SDMTools/man/optim.thresh.Rd
SDMTools/man/ConnCompLabel.Rd
SDMTools/man/Kappa.Rd
SDMTools/man/grid.area.Rd
SDMTools/man/PatchStat.Rd
SDMTools/man/extract.data.Rd
SDMTools/man/getXYcoords.Rd
SDMTools/man/Istat.Rd
SDMTools/man/quick.map.Rd
SDMTools/man/slope.Rd
SDMTools/man/destination.Rd
SDMTools/man/asc2dataframe.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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