SDMTools: Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

This packages provides a set of tools for post processing the outcomes of species distribution modeling exercises. It includes novel methods for comparing models and tracking changes in distributions through time. It further includes methods for visualizing outcomes, selecting thresholds, calculating measures of accuracy and landscape fragmentation statistics, etc.. This package was made possible in part by financial support from the Australian Research Council & ARC Research Network for Earth System Science.

Author
Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie
Date of publication
2014-08-05 12:16:01
Maintainer
Jeremy VanDerWal <jjvanderwal@gmail.com>
License
GPL (>= 3)
Version
1.1-221
URLs

View on CRAN

Man pages

accuracy
Measures of Model Accuracy
asc2dataframe
Ascii Grid Files to Dataframe and Dataframe to Ascii Grid...
asc.from.raster
Raster conversion functions for adehabitat, raster and sp...
auc
Area Under the Curve of the Reciever Operating Curve
circular.averaging
Circular Averaging based on Vector Averaging
ClassStat
Landscape Class Statistics
COGravity
Centre of Gravity or Mass calculations for spatial data
compare.matrix
Biplot Comparison of Matrices
confusion.matrix
Confusion Matrix
ConnCompLabel
Connected Components Labelling - Unique Patch Labelling
destination
Vincenty Direct Calculation of a Destination
distance
Vincenty Direct Calculation of Distance and Direction
extract.data
Spatial Join of Points with Raster Grids
getXYcoords
Computes the X and Y Coordinates of the Pixels of a Raster...
grid.area
Create a Grid of Cell Areas or Perimeters
grid.info
Grid Information from Geographic (lat lon) Projections
Istat
I Similarity Statistic for Quantifying Niche Overlap
Kappa
Kappa Statistic
lcmw
Least Cost Moving Windows Calculation
legend.gradient
Legend Gradient
omission
Measures of Accuracy
optim.thresh
Estimation of Optimal Threshold Values
PatchStat
Landscape Patch Statistics
pnt.in.poly
Point in Polygon
put.data
Spatial Join of Points with Raster Grids - replace data
quick.map
Quick Map
read.asc
ESRI ASCII Raster File Import And Export
Scalebar
Scalebar for Projected Maps
SigDiff
Identify Regions of Significant Differences
slope
Slope and aspect calculations
wt.mean
Weighted mean, variance and standard deviation calculations
ZonalStat
Landscape Zonal Statistics

Files in this package

SDMTools
SDMTools/src
SDMTools/src/writeasciidata.c
SDMTools/src/movewindow.c
SDMTools/src/getmin.c
SDMTools/src/vincenty.geodesics.c
SDMTools/src/patchstats.c
SDMTools/src/ConnectedComponentLabelling.c
SDMTools/src/pointinpolygon.c
SDMTools/src/slope.aspect.c
SDMTools/NAMESPACE
SDMTools/R
SDMTools/R/Istat.R
SDMTools/R/grid.area.R
SDMTools/R/compare.matrix.R
SDMTools/R/asc2dataframe.R
SDMTools/R/asc.from.raster.R
SDMTools/R/getXYcoords.R
SDMTools/R/optim.thresh.R
SDMTools/R/quick.map.r
SDMTools/R/ClassStat.R
SDMTools/R/extract.data.R
SDMTools/R/Scalebar.R
SDMTools/R/confusion.matrix.R
SDMTools/R/circular.averaging.R
SDMTools/R/slope.R
SDMTools/R/destination.R
SDMTools/R/COGravity.R
SDMTools/R/ZonalStat.R
SDMTools/R/omission.R
SDMTools/R/pnt.in.poly.R
SDMTools/R/SigDiff.R
SDMTools/R/ConnCompLabel.R
SDMTools/R/put.data.R
SDMTools/R/Kappa.R
SDMTools/R/legend.gradient.r
SDMTools/R/wt.mean.R
SDMTools/R/read.asc.R
SDMTools/R/accuracy.R
SDMTools/R/auc.R
SDMTools/R/lcmw.R
SDMTools/R/distance.R
SDMTools/R/grid.info.R
SDMTools/R/PatchStat.R
SDMTools/MD5
SDMTools/DESCRIPTION
SDMTools/ChangeLog
SDMTools/man
SDMTools/man/SigDiff.Rd
SDMTools/man/omission.Rd
SDMTools/man/accuracy.Rd
SDMTools/man/legend.gradient.Rd
SDMTools/man/ZonalStat.Rd
SDMTools/man/lcmw.Rd
SDMTools/man/compare.matrix.Rd
SDMTools/man/COGravity.Rd
SDMTools/man/wt.mean.Rd
SDMTools/man/distance.Rd
SDMTools/man/auc.Rd
SDMTools/man/read.asc.Rd
SDMTools/man/Scalebar.Rd
SDMTools/man/circular.averaging.Rd
SDMTools/man/put.data.Rd
SDMTools/man/asc.from.raster.Rd
SDMTools/man/pnt.in.poly.Rd
SDMTools/man/ClassStat.Rd
SDMTools/man/confusion.matrix.Rd
SDMTools/man/grid.info.Rd
SDMTools/man/optim.thresh.Rd
SDMTools/man/ConnCompLabel.Rd
SDMTools/man/Kappa.Rd
SDMTools/man/grid.area.Rd
SDMTools/man/PatchStat.Rd
SDMTools/man/extract.data.Rd
SDMTools/man/getXYcoords.Rd
SDMTools/man/Istat.Rd
SDMTools/man/quick.map.Rd
SDMTools/man/slope.Rd
SDMTools/man/destination.Rd
SDMTools/man/asc2dataframe.Rd