prep.SEAGLE: Prepare data for input into SEAGLE function

In SEAGLE: Scalable Exact Algorithm for Large-Scale Set-Based Gene-Environment Interaction Tests

Description

This function checks and formats data for input into SEAGLE function

Usage

prep.SEAGLE(y, X, intercept, E, G)

Arguments

y	Vector of observed phenotypes
X	Matrix of covariates without genetic marker interactions
intercept	1 if the first column of X is the all ones vector, 0 otherwise
E	E Vector of environmental covariates
G	G Matrix of genotype data

Value

List object containing prepared data for input into SEAGLE function

Examples

dat <- makeSimData(H=cosihap, n=500, L=10, gammaG=1, gammaGE=0, causal=4, seed=1)
objSEAGLE <- prep.SEAGLE(y=dat$y, X=dat$X, intercept=1, E=dat$E, G=dat$G)

SEAGLE documentation built on Nov. 6, 2021, 1:06 a.m.