setpath.data: Example data for the SETPath method

In SETPath: Spiked Eigenvalue Test for Pathway data

Description

An example dataset containing genes from 4 pathways.

Usage

data(setpath.data)

Format

The format is: List of 4 $ d1 : num [1:25, 1:80] 0.701 -2.107 0.624 -0.885 0.344 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:25] "control1" "control2" "control3" "control4" ... .. ..$ : chr [1:80] "gene1" "gene2" "gene3" "gene4" ... $ d2 : num [1:50, 1:80] 1.003 -1.323 0.906 0.708 1.131 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:50] "case1" "case2" "case3" "case4" ... .. ..$ : chr [1:80] "gene1" "gene2" "gene3" "gene4" ... $ pathwaynames: chr [1:4] "pathway 1" "pathway 2" "pathway 3" "pathway 4" $ pathwaygenes:List of 4 ..$ : chr [1:20] "gene63" "gene33" "gene21" "gene19" ... ..$ : chr [1:50] "gene19" "gene25" "gene22" "gene30" ... ..$ : chr [1:25] "gene72" "gene32" "gene62" "gene76" ... ..$ : chr [1:30] "gene42" "gene7" "gene45" "gene39" ...

SETPath documentation built on May 2, 2019, 8:32 a.m.