SGCS: Spatial Graph Based Clustering Summaries for Spatial Point Patterns

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Graph based clustering summaries for spatial point patterns. Includes Connectivity function, Cumulative connectivity function and clustering function, plus the triangle/triplet intensity function T.

Author
Tuomas Rajala
Date of publication
2016-10-11 12:42:43
Maintainer
Tuomas Rajala <tuomas.rajala@iki.fi>
License
GPL (>= 2)
Version
2.5

View on CRAN

Man pages

arcs
Compute the boundary of disks
bounding_box_xy
Compute the bounding window from coordinates
clustfun
Clustering function
clustfun_denominator
Estimate the denominator of clustering function
confun
Connectivity function and cumulative connectivity function.
default_r
Default range vector
edge_distance
Distances to observation window edge
internalise_pp
Convert input to SGCS internal point pattern data
internal_to_ppp
Data to spatstat format
Kfun
Ripley's K-function
morphoArea
Morphologicals: Relative area fraction of diluted pattern
morphoEuler
Morphologicals: Euler number of dilated pattern
morphoLength
Morphologicals: Relative boundary length of diluted pattern
pairwise_distances
pairwise distances
Rfun
Clustering function versio 2
SGCS
SGCS: Spatial Graph based Clustering Summaries
Tfun
Triplet intensity function
translation_weights
Translation weights Compute the translation edge correction...

Files in this package

SGCS
SGCS/src
SGCS/src/arcs.h
SGCS/src/pairwise-distances.cpp
SGCS/src/arcs.cpp
SGCS/src/confun.cpp
SGCS/src/Rextras.cpp
SGCS/src/clustfun-denominator.cpp
SGCS/src/Components.h
SGCS/src/Rextras.h
SGCS/src/Pp.cpp
SGCS/src/Graph.cpp
SGCS/src/translation-weights.cpp
SGCS/src/morphoArea.cpp
SGCS/src/morphoLength.cpp
SGCS/src/clustfun.cpp
SGCS/src/Components.cpp
SGCS/src/Kfun.cpp
SGCS/src/morphoEuler.cpp
SGCS/src/Graph.h
SGCS/src/Tfun.cpp
SGCS/src/Pp.h
SGCS/src/Rfun.cpp
SGCS/src/getArcs.cpp
SGCS/NAMESPACE
SGCS/R
SGCS/R/defaults.R
SGCS/R/internalise_pp.R
SGCS/R/clustering-function.R
SGCS/R/morpho-Length.R
SGCS/R/connectivity-function.R
SGCS/R/K-function.R
SGCS/R/translation-weights.R
SGCS/R/morpho-Area.R
SGCS/R/pairwise-distances.R
SGCS/R/arcs.R
SGCS/R/denominator-of-clustfun.R
SGCS/R/R-function.R
SGCS/R/internal-to-ppp.R
SGCS/R/bounding-box-xy.R
SGCS/R/package.R
SGCS/R/edge-distance.R
SGCS/R/T-function.R
SGCS/R/morpho-Euler.R
SGCS/MD5
SGCS/DESCRIPTION
SGCS/man
SGCS/man/Kfun.Rd
SGCS/man/internal_to_ppp.Rd
SGCS/man/translation_weights.Rd
SGCS/man/arcs.Rd
SGCS/man/internalise_pp.Rd
SGCS/man/Rfun.Rd
SGCS/man/Tfun.Rd
SGCS/man/morphoLength.Rd
SGCS/man/morphoArea.Rd
SGCS/man/default_r.Rd
SGCS/man/edge_distance.Rd
SGCS/man/clustfun.Rd
SGCS/man/pairwise_distances.Rd
SGCS/man/SGCS.Rd
SGCS/man/clustfun_denominator.Rd
SGCS/man/morphoEuler.Rd
SGCS/man/bounding_box_xy.Rd
SGCS/man/confun.Rd