SHLR: Shared Haplotype Length Regression
Version 1.0

A statistical method designed to take advantage of population genetics and microevolutionary theory, specifically by testing the association between haplotype sharing length and trait of interest.

Browse man pages Browse package API and functions Browse package files

AuthorSatria Sajuthi
Date of publication2016-04-04 18:39:37
MaintainerSatria Sajuthi <ssajuthi@wakehealth.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SHLR")

Man pages

read.shapeit.haps: Helper function to read phased haplotypes produces by SHAPEIT
run.SHLR.scan: SHLR scan

Functions

MILC Source code
SHLR Source code
SHLR.fam Source code
gee.pca.null Source code
mat2zcor Source code
mk.S Source code
mk.X_max Source code
mk.X_pca Source code
mk.X_sum Source code
mk.contrast.matrix Source code
mk.design.mat Source code
mk.diplotype.vec Source code
mk.geno.diplo.map Source code
mk.genotype Source code
mk.genotype.vec Source code
mk.kinship.matrix Source code
read.shapeit.haps Man page Source code
recond Source code
run.SHLR.scan Man page Source code

Files

inst
inst/extdata
inst/extdata/phased.haps
inst/extdata/plink.fam
NAMESPACE
R
R/functions.R
MD5
DESCRIPTION
man
man/read.shapeit.haps.Rd
man/run.SHLR.scan.Rd
SHLR documentation built on May 19, 2017, 11:34 p.m.