Description Usage Arguments Value
This function reads phased haplotypes produces by SHAPEIT and convert them into a data structure required by run.SHLR.scan()
1 | read.shapeit.haps(infile)
|
infile |
The phased haplotype file produces by SHAPEIT |
haps |
Haplotype array consists of one haplotype per row. |
marker.map |
Marker map contains information about marker name in the 1st column and marker position in the 2nd column |
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