read.shapeit.haps: Helper function to read phased haplotypes produces by SHAPEIT
In SHLR: Shared Haplotype Length Regression
Description
Usage
Arguments
Value
Description
This function reads phased haplotypes produces by SHAPEIT and
convert them into a data structure required by run.SHLR.scan()
Usage
1
read.shapeit.haps(infile)
Arguments
infile
The phased haplotype file produces by SHAPEIT
Value
haps
Haplotype array consists of one haplotype per row.
marker.map
Marker map contains information about
marker name in the 1st column and
marker position in the 2nd column
SHLR documentation built on May 30, 2017, 1:23 a.m.
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Description Usage Arguments Value
Description
This function reads phased haplotypes produces by SHAPEIT and convert them into a data structure required by run.SHLR.scan()
Usage
1 | read.shapeit.haps(infile)
|
Arguments
infile |
The phased haplotype file produces by SHAPEIT |
Value
haps |
Haplotype array consists of one haplotype per row. |
marker.map |
Marker map contains information about marker name in the 1st column and marker position in the 2nd column |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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