Files in SIMMS
Subnetwork Integration for Multi-Modal Signatures
MD5
NEWS
NAMESPACE
DESCRIPTION
R/dichotomize.dataset.R
R/calculate.network.coefficients.R
R/get.program.defaults.R
R/load.cancer.datasets.R
R/create.sensitivity.plot.R
R/SIMMS-package.R
R/make.matrix.R
R/dichotomize.meta.dataset.R
R/create.survobj.R
R/calculate.sensitivity.stats.R
R/centre.scale.R
R/derive.network.features.R
R/get.chisq.stats.R
R/create.KM.plot.R
R/fit.coxmodel.R
R/calculate.meta.survival.R
R/prepare.training.validation.datasets.R
R/get.adjacency.matrix.R
R/pred.survivalmodel.R
R/create.classifier.multivariate.R
R/fit.survivalmodel.R
R/create.classifier.univariate.R
R/fit.interaction.model.R
R/create.survivalplots.R
inst/doc/Using-SIMMS.html
inst/doc/Using-SIMMS.R
inst/doc/Using-SIMMS.Rmd
inst/programdata/testdata/datasets.txt
inst/programdata/testdata/Breastdata2/mRNA_abundance.txt
inst/programdata/testdata/Breastdata2/patient_annotation.txt
inst/programdata/testdata/Breastdata1/mRNA_abundance.txt
inst/programdata/testdata/Breastdata1/patient_annotation.txt
inst/programdata/networkdb/MEMo.COADREAD/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo.COADREAD/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo.COADREAD/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo.GBM/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo.GBM/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo.GBM/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/Mammaprint/pathway_based_networks_flattened.txt
inst/programdata/networkdb/Mammaprint/pathway_based_sub_networks.txt
inst/programdata/networkdb/Mammaprint/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/default/pathway_based_networks.txt
inst/programdata/networkdb/default/pathway_based_networks_flattened.txt
inst/programdata/networkdb/default/pathway_based_sub_networks.txt
inst/programdata/networkdb/default/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo/HGNC_Entrez_map.txt
inst/programdata/networkdb/MEMo/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo/map.hgnc.entrez.R
inst/programdata/networkdb/MEMo/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo/pathway_based_sub_networks__HGNC.txt
inst/programdata/networkdb/deILC30/pathway_based_networks_flattened.txt
inst/programdata/networkdb/deILC30/pathway_based_sub_networks.txt
inst/programdata/networkdb/PI3K/pathway_based_networks_flattened.txt
inst/programdata/networkdb/PI3K/pathway_based_sub_networks.txt
inst/programdata/networkdb/PI3K/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo.OV/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo.OV/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo.OV/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo.BRCA/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo.BRCA/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo.BRCA/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/Oncotypedx/pathway_based_networks_flattened.txt
inst/programdata/networkdb/Oncotypedx/pathway_based_sub_networks.txt
inst/programdata/networkdb/Oncotypedx/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/test/pathway_based_networks_flattened.txt
inst/programdata/networkdb/test/pathway_based_sub_networks.txt
inst/programdata/networkdb/test/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/MEMo.KIRC/pathway_based_networks_flattened.txt
inst/programdata/networkdb/MEMo.KIRC/pathway_based_sub_networks.txt
inst/programdata/networkdb/MEMo.KIRC/pathway_based_sub_networks_all.txt
inst/programdata/networkdb/deILC.NR30/pathway_based_networks_flattened.txt
inst/programdata/networkdb/deILC.NR30/pathway_based_sub_networks.txt
build/vignette.rds
vignettes/GitHub2.css
vignettes/Using-SIMMS.Rmd
man/derive.network.features.Rd
man/get.chisq.stats.Rd
man/centre.scale.dataset.Rd
man/create.classifier.multivariate.Rd
man/calculate.sensitivity.stats.Rd
man/create.survivalplots.Rd
man/fit.interaction.model.Rd
man/get.adjacency.matrix.Rd
man/create.sensitivity.plot.Rd
man/get.program.defaults.Rd
man/calculate.network.coefficients.Rd
man/fit.coxmodel.Rd
man/load.cancer.datasets.Rd
man/create.classifier.univariate.Rd
man/create.survobj.Rd
man/calculate.meta.survival.Rd
man/create.KM.plot.Rd
man/dichotomize.dataset.Rd
man/fit.survivalmodel.Rd
man/SIMMS-package.Rd
man/dichotomize.meta.dataset.Rd
man/make.matrix.Rd
man/pred.survivalmodel.Rd
man/prepare.training.validation.datasets.Rd
