bulkSample | Simulate bulk sampling |
plotSlice | 2D cross section of the simulated tumor |
progressionChain | Create a linear chain graph to describe the order of... |
progressionDAG_from_igraph | Define the progression of mutations from an 'igraph' object |
randomBulkSamples | Simulate multi-region bulk sampling |
randomNeedles | Simulate fine needle aspiration |
randomSingleCells | Simulate single cell sequencing data |
simulateTumor | Spatial simulation of tumor growth |
singleCell | Simulate single cell sequencing data |
SITH-package | Visualize and analyze intratumor heterogeneity using a... |
spatialDistribution | Quantify the spatial distribution of mutants |
visualizeTumor | Interactive visualization of the simulated tumor |
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