visualizeTumor: Interactive visualization of the simulated tumor
In SITH: A Spatial Model of Intra-Tumor Heterogeneity

Description Usage Arguments Details Value Author(s)

Interactive visualization of the simulated tumor using the rgl package (if available).

1	visualizeTumor(tumor, plot.type = "normal", background = "black", axes = FALSE)

`tumor`	A list which is the output of `simulateTumor()`.
`plot.type`	Which type of plot to draw. "Normal" assigns a random rgb value to each genotype while "heat" colors cells with more mutations red and cells with fewer mutations blue.
`background`	If rgl is installed, this will set the color of the background
`axes`	Will include axes (rgl only).

If rgl is installed, then the plots will be interactive. If rgl is unavailable, static plots will be created with scatterplot3d. Since plotting performance with scatterplot3d is reduced, it is strongly recommended that rgl is installed for optimal use of this function.

None.

Phillip B. Nicol

SITH documentation built on Jan. 5, 2021, 5:08 p.m.