API for SNPassoc
SNPs-Based Whole Genome Association Studies
| Global functions | |
|---|---|
| $<-.setupSNP | Man page |
| Bonferroni.sig | Man page |
| CA | Source code |
| G | Source code |
| GenomicControl | Man page Source code |
| GenotypeRate | Man page |
| HapMap | Man page |
| HapMap.SNPs.pos | Man page |
| LD | Man page Source code |
| LD.setupSNP | Man page |
| LD.snp | Man page |
| LDplot | Man page |
| LDtable | Man page |
| SNPHWE | Man page |
| SNPassoc-internal | Man page |
| SNPs | Man page |
| SNPs.info.pos | Man page |
| Table.N.Per | Man page |
| Table.mean.se | Man page |
| WGassociation | Man page |
| WGstats | Man page |
| [.WGassociation | Man page |
| [.setupSNP | Man page |
| [.snp | Man page |
| [<-.setupSNP | Man page |
| [[<-.setupSNP | Man page |
| `GenotypeRate` | Source code |
| `SNPHWE` | Source code |
| `Table.N.Per` | Source code |
| `Table.mean.se` | Source code |
| `[.WGassociation` | Source code |
| `[.setupSNP` | Source code |
| `[<-.setupSNP` | Source code |
| `[[<-.setupSNP` | Source code |
| `additive.WGassociation` | Source code |
| `assoc` | Source code |
| `codominant.WGassociation` | Source code |
| `codominant.default` | Source code |
| `codominant.snp` | Source code |
| `codominant` | Source code |
| `dominant.WGassociation` | Source code |
| `extractPval` | Source code |
| `haplo.inter.fit` | Source code |
| `haplo.interaction` | Source code |
| `int` | Source code |
| `intervals.dif` | Source code |
| `intervals.or` | Source code |
| `intervals` | Source code |
| `is.quantitative` | Source code |
| `is.snp` | Source code |
| `labels.WGassociation` | Source code |
| `labels.setupSNP` | Source code |
| `modelTest` | Source code |
| `orderChromosome` | Source code |
| `overdominant.WGassociation` | Source code |
| `plot.SNPinteraction` | Source code |
| `plot.setupSNP` | Source code |
| `print.SNPinteraction` | Source code |
| `print.haploOut` | Source code |
| `print.tableHWE` | Source code |
| `pvalTest` | Source code |
| `pvalues.WGassociation` | Source code |
| `pvalues` | Source code |
| `recessive.WGassociation` | Source code |
| `reorder.snp` | Source code |
| `setupSNP` | Source code |
| `summary.WGassociation` | Source code |
| `summary.haplo.glm` | Source code |
| `summary.setupSNP` | Source code |
| `table.interaction` | Source code |
| `togeno` | Source code |
| additive | Man page |
| additive.WGassociation | Man page |
| additive.default | Man page |
| additive.snp | Man page |
| as.snp | Man page |
| assoc | Man page |
| association | Man page |
| association.fit | Man page |
| asthma | Man page |
| codominant | Man page |
| codominant.WGassociation | Man page |
| codominant.default | Man page |
| codominant.snp | Man page |
| crea.lab | Man page |
| dominant | Man page |
| dominant.WGassociation | Man page |
| dominant.default | Man page |
| dominant.snp | Man page |
| expandsetupSNP | Man page |
| extractPval | Man page |
| extractPval.i | Man page |
| geneticModel | Man page |
| getGeneSymbol | Man page Source code |
| getNiceTable | Man page Source code |
| getSignificantSNPs | Man page |
| getTableSNP | Source code |
| haplo.inter.fit | Man page |
| haplo.interaction | Man page |
| inheritance | Man page |
| int | Man page |
| interactionPval | Man page |
| interleave | Man page Source code |
| intervals | Man page |
| intervals.dif | Man page |
| intervals.haplo.glm | Man page |
| intervals.or | Man page |
| is.Monomorphic | Man page |
| is.quantitative | Man page |
| is.snp | Man page |
| labels.WGassociation | Man page |
| labels.setupSNP | Man page |
| make.geno | Man page |
| maxstat | Man page Source code |
| maxstat.default | Man page Source code |
| maxstat.matrix | Man page Source code |
| maxstat.setupSNP | Man page Source code |
| maxstat.table | Man page Source code |
| modelTest | Man page |
| odds | Man page Source code |
| orderChromosome | Man page |
| overdominant | Man page |
| overdominant.WGassociation | Man page |
| overdominant.default | Man page |
| permTest | Man page Source code |
| plot.SNPinteraction | Man page |
| plot.WGassociation | Man page Source code |
| plot.permTest | Man page Source code |
| plot.setupSNP | Man page |
| plot.snp | Man page |
| plotMissing | Man page |
| print.LD | Source code |
| print.LD.data.frame | Source code |
| print.SNPinteraction | Man page |
| print.WGassociation | Man page |
| print.haploOut | Man page |
| print.intervals | Man page |
| print.maxstat | Man page Source code |
| print.permTest | Man page Source code |
| print.snp | Man page |
| print.snpOut | Man page |
| print.summary.LD.data.frame | Source code |
| print.summary.snp | Man page Source code |
| print.tableHWE | Man page |
| pvalTest | Man page |
| pvalues | Man page |
| pvalues.WGassociation | Man page |
| qqpval | Man page Source code |
| recessive | Man page |
| recessive.WGassociation | Man page |
| recessive.default | Man page |
| recessive.snp | Man page |
| related | Man page Source code |
| reorder.snp | Man page |
| resHapMap | Man page |
| scanWGassociation | Man page |
| setupSNP | Man page |
| snp | Man page |
| sortSNPs | Man page |
| summary.LD.data.frame | Source code |
| summary.WGassociation | Man page |
| summary.haplo.glm | Man page |
| summary.setupSNP | Man page |
| summary.snp | Man page |
| table.corner | Man page |
| table.interaction | Man page |
| tableHWE | Man page |
| togeno | Man page |
| trim | Man page Source code |
