SNPassoc-internal: Internal SNPstat functions

In SNPassoc: SNPs-Based Whole Genome Association Studies

Internal SNPstat functions

Description

Internal SNPassoc functions

Usage

association.fit(var, dep, adj, quantitative, type, level, 
       nIndiv, genotypingRate = 0, ...) 
extractPval(x)
extractPval.i(i,x,pos,models)
SNPHWE(x)
GenotypeRate(x)
haplo.inter.fit(geno, var2, dep, adj = NULL, fam, 
          haplo.freq.min, ...)
crea.lab(x,pos.ini,cex,dist)
orderChromosome(x)
togeno(f,sep=sep,lab=lab)
expandsetupSNP(o)
pvalTest(dataX,Y,quantitative,type,genotypingRate)
modelTest(X,Y,quantitative,type,genotypingRate)
assoc(y,x,test="lrt",quantitative)
trim(s)
interleave(..., append.source=TRUE, sep=": ", drop=FALSE)
## Default S3 method:
codominant(o)
## Default S3 method:
dominant(o)
## Default S3 method:
recessive(o)
## Default S3 method:
overdominant(o)
## Default S3 method:
additive(o)

Details

These are not to be called by the user

Value

No return value, internal calls

SNPassoc documentation built on Dec. 28, 2022, 1:59 a.m.