intervals: Print ORs and 95% confidence intervals for an object of class...

In SNPassoc: SNPs-Based Whole Genome Association Studies

Print ORs and 95% confidence intervals for an object of class 'haplo.glm'

Description

Print ORs and confidence intervals for an object of class 'haplo.glm'

Usage

intervals(o, level=.95, ...)

Arguments

o	object of class 'haplo.glm'
level	significance level. Default is 95 percent
...	other arguments

Value

intervals object with ORs and 95% confidence intervals for an object of class 'haplo.glm'

Examples

# Not Run
library(SNPassoc)
library(haplo.stats)

data(asthma, package = "SNPassoc")

asthma.s <- setupSNP(data=asthma, colSNPs=7:ncol(asthma), sep="")
trait <- asthma.s$casecontrol
snpsH <- c("rs714588", "rs1023555",  "rs898070")
genoH <- make.geno(asthma.s, snpsH)

mod <- haplo.stats:: haplo.glm( trait ~ genoH,           
                                family="binomial", 
                                locus.label=snpsH,
                                allele.lev=attributes(genoH)$unique.alleles,
                                control = haplo.glm.control(haplo.freq.min=0.05))   
intervals(mod)
summary(mod)

SNPassoc documentation built on Dec. 28, 2022, 1:59 a.m.