API for SOMMD
Self Organising Maps for the Analysis of Molecular Dynamics Data

Global functions
TwoLetters	Source code
average.neur.property	Man page Source code
calc.dist.mat	Source code
calc.distances	Man page Source code
calc.dists	Man page Source code
cat.trj	Man page Source code
clust.centroid	Source code
cluster.pathways	Man page Source code
cluster.representatives	Man page Source code
comp.trans.mat	Man page Source code
compute.distance	Source code
dist.paths	Source code
fit.trj	Man page Source code
map.color	Man page Source code
matrix2graph	Man page Source code
native.cont	Man page Source code
neur.population	Man page Source code
neur.representatives	Man page Source code
print.struct	Man page Source code
print.trj	Man page Source code
read.gro	Man page Source code
read.struct	Man page Source code
read.trj	Man page Source code
remap.data	Man page Source code
rio_coord_reshape	Source code
rio_read_xtc	Man page Source code
rio_read_xtc2xyz	Man page Source code
rio_read_xtc_natoms	Man page Source code
rio_read_xtc_nframes	Man page Source code
rio_write_xtc	Man page Source code
select_representative	Source code
silhouette.profile	Man page Source code
silhouette.score	Man page Source code
som.add.circles	Man page Source code
som.add.clusters.legend	Man page Source code
som.add.numbers	Man page Source code
stride.trj	Man page Source code
struct2pdb	Man page Source code
summary.struct	Man page Source code
summary.trj	Man page Source code
trace.path	Man page Source code
trj2pdb	Man page Source code
trj2xyz	Man page Source code