Files in SOMMD
Self Organising Maps for the Analysis of Molecular Dynamics Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/calc.dist.mat.R
R/silhouette.profile.R
R/cluster.pathways.R
R/som.add.numbers.R
R/calc.distances.R
R/som.add.circles.R
R/struct2pdb.R
R/stride.trj.R
R/remap.data.R
R/print.struct.R
R/native.cont.R
R/summary.struct.R
R/silhouette.score.R
R/cluster.representatives.R
R/read.trj.R
R/calc.dists.R
R/print.trj.R
R/trace.path.R
R/cat.trj.R
R/summary.trj.R
R/som.add.clusters.legend.R
R/read.gro.R
R/average.neur.property.R
R/fit.trj.R
R/read.struct.R
R/neur.population.R
R/rio_xtc.R
R/trj2pdb.R
R/network.functions.R
R/utils.R
R/neur.representatives.R
src/Makevars
src/init.c
src/rio_xtc.c
src/xdrfile/xdrfile_xtc.c
src/xdrfile/xdrfile.h
src/xdrfile/xdrfile_trr.h
src/xdrfile/xdrfile_trr.c
src/xdrfile/xdrfile.c
src/xdrfile/xdrfile_xtc.h
inst/COPYRIGHT
inst/CITATION
inst/WORDLIST
inst/extdata/SOM.rds
inst/extdata/HIF2a-MD.xtc
inst/extdata/SOM_HIFa.rds
inst/extdata/som_model.rds
inst/extdata/HIF2a-MD-2.xtc
inst/extdata/HIF2a.pdb
inst/extdata/HIF2a.gro
inst/extdata/THS020.pdb
inst/extdata/THS020.gro
inst/Rmd/01_Clustering.Rmd
inst/Rmd/03_NetworkAnalysis.Rmd
inst/Rmd/02_PathsAnalysis.Rmd
tests/testthat.R
tests/testthat/test-comp.trans.mat.r
tests/testthat/test-remap.data.r
tests/testthat/test-native.cont.r
tests/testthat/test-cluster.representatives.r
tests/testthat/test-read.struct.r
tests/testthat/test-read.trj.r
tests/testthat/test-matrix2graph.r
tests/testthat/test-calc.dists.r
tests/testthat/test-read.gro.r
tests/testthat/test-cluster.pathways.r
tests/testthat/test-struct2pdb.r
tests/testthat/test-calc.distances.r
tests/testthat/test-neur.representatives.r
man/summary.trj.Rd
man/calc.dists.Rd
man/matrix2graph.Rd
man/trj2xyz.Rd
man/trj2pdb.Rd
man/average.neur.property.Rd
man/som.add.numbers.Rd
man/rio_read_xtc.Rd
man/read.trj.Rd
man/native.cont.Rd
man/silhouette.score.Rd
man/comp.trans.mat.Rd
man/rio_read_xtc2xyz.Rd
man/neur.representatives.Rd
man/som.add.clusters.legend.Rd
man/read.gro.Rd
man/fit.trj.Rd
man/map.color.Rd
man/cluster.pathways.Rd
man/read.struct.Rd
man/cat.trj.Rd
man/print.struct.Rd
man/neur.population.Rd
man/remap.data.Rd
man/som.add.circles.Rd
man/silhouette.profile.Rd
man/summary.struct.Rd
man/rio_write_xtc.Rd
man/calc.distances.Rd
man/trace.path.Rd
man/rio_read_xtc_natoms.Rd
man/stride.trj.Rd
man/print.trj.Rd
man/cluster.representatives.Rd
man/rio_read_xtc_nframes.Rd
man/struct2pdb.Rd
