initGrid: Create an empty grid

In SOMbrero: SOM Bound to Realize Euclidean and Relational Outputs

Create an empty grid

Description

Create an empty (square) grid equipped with topology.

Usage

initGrid(
  dimension = c(5, 5),
  topo = c("square", "hexagonal"),
  dist.type = c("euclidean", "maximum", "manhattan", "canberra", "minkowski", "letremy")
)

Arguments

dimension	a 2-dimensional vector giving the dimensions (width, length) of the grid
topo	topology of the grid. Accept values "square" (Default) or "hexagonal".
dist.type	distance type that defines the topology of the grid (see 'Details'). Default to "euclidean"

Details

The units (neurons) of the grid are positionned at coordinates (1,1), (1,2), (1,3), ..., (2,1), (2,2), ..., for the square topology. The topology of the map is defined by a distance based on those coordinates, that can be one of "euclidean", "maximum", "manhattan", "canberra", "minkowski", "letremy", where the first 5 ones correspond to distance methods implemented in dist and "letremy" is the distance of the original implementation by Patrick Letrémy that switches between "maximum" and "euclidean" during the training.

Value

an object of class myGrid with the following entries:

• coord 2-column matrix with x and y coordinates of the grid units

• topo topology of the grid;

• dim dimensions of the grid (width corresponds to x coordinates)

• dist.type distance type that defines the topology of the grid.

Author(s)

Élise Maigné [e-mail]
Madalina Olteanu [e-mail]
Nathalie Vialaneix [e-mail]

References

Letrémy P. (2005) Programmes basés sur l'algorithme de Kohonen et dédiés à l'analyse des données. SAS/IML programs for 'korresp'.

See Also

plot.myGrid for plotting the grid

Examples

initGrid()
initGrid(dimension=c(5, 7), dist.type = "maximum")

SOMbrero documentation built on May 29, 2024, 1:27 a.m.