bug fixes: - totally removing rgdal following r-spatial evolution - moving from sp to sf and leaflet following r-spatial evolution
new/edited: - make all algorithm parameters settable (#66) - implement parallelization everywhere possible (e.g. ensemble/stack modelling, projection, uncertainty, etc.) - replace parLapply with foreach (less memory use, #13/#30/#58) - add options to reduce memory use (minimal.memory, tmp="filepath", SDM.projections, #51) - add geographic buffering as new PA-sampling strategy (geobuffer) - added sdm::calibration as evaluation statistic - switch evaluation from SDMTools to dismo (#74/#78) - add final.fit.data to control test/train of final model (#77) - add information which data was used for final model training (obj@data$train) - restructure project function (Russian doll) - add option to return projections directly as rasters (output.format='rasters') - extend vignette
bug fixes: - fix unequal fold sampling in cross-validation - fix Maxent projection (#70) - fix Maxent background sampling error (when area had less than 10,000 cells) - fix lost connection error when using tmp - stop stack_modelling immediately, if less than 1 species - add GBM default n.cores=1 to avoid parallelization conflicts
project
eval=F
in stacking function for Robin issueshinyFiles
version 0.7.0rmarkdown
added to VignetteBuilder field in DESCRIPTIONmapDiversity
S4 methods for SSDM with pSSDM, bSSDM, Bernoulli, MaximumLikelyhood, PRR.MEM, PRR.pSSDMevaluate.Stack.SDM
project.R
with MEM bug fixedstacking.R
with MEM bug fixedspThin
package responsible for the doc issue, not fixed but currently just commenting the pacakge to unactivate it in waiting. thread open on Roxygen2
development repository.rgdal
issue on travis due to test_load_occ
rgdal
issue on travis due to load_var
rgdal
in DEPENDENCIES for testthat in Travistestthat
(39%)quit
button in guistack_modelling
example fixTRUE
and FALSE
goodpractice
package checklength(x)
replaced by seq_len(x)
<-
instead of =
in examplesshinyFiles
in DEPENDENCIESplot(SSDM)
Env
and Occurrences
datagui
gui
Dimitri Justeau: endemism parameter bug in the gui fixed
-Stacking Algo. Corr. row names duplicate (strsplit) - Duplicated '.tif' in load_occ docDimitri Justeau - Null supported by Spcol (default) in .checkargs Dimitri Justeau
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