STEPCAM: ABC-SMC Inference of STEPCAM

Collection of model estimation, and model plotting functions related to the STEPCAM family of community assembly models. STEPCAM is a STEPwise Community Assembly Model that infers the relative contribution of Dispersal Assembly, Habitat Filtering and Limiting Similarity from a dataset consisting of the combination of trait and abundance data. See also <http://onlinelibrary.wiley.com/wol1/doi/10.1890/14-0454.1/abstract> for more information.

AuthorThijs Janzen [aut, cre], Fons van der Plas [aut], Thorsten Hauffe [ctb]
Date of publication2016-09-21 12:21:01
MaintainerThijs Janzen <thijsjanzen@gmail.com>
LicenseGPL-2
Version1.2
https://github.com/thijsjanzen/STEPCAM

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Files

STEPCAM
STEPCAM/inst
STEPCAM/inst/doc
STEPCAM/inst/doc/STEPCAM_plotting.html
STEPCAM/inst/doc/STEPCAM_plotting.Rmd
STEPCAM/inst/doc/STEPCAM_plotting.R
STEPCAM/inst/doc/STEPCAM.Rmd
STEPCAM/inst/doc/STEPCAM.R
STEPCAM/inst/doc/STEPCAM.html
STEPCAM/tests
STEPCAM/tests/testthat.R
STEPCAM/tests/testthat
STEPCAM/tests/testthat/test-plotSTEPCAM.R
STEPCAM/tests/testthat/test-plotSMC.R
STEPCAM/tests/testthat/test-STEPCAM.R
STEPCAM/tests/testthat/test-GenerateValues.R
STEPCAM/tests/testthat/test-STEPCAM_ABC.R
STEPCAM/tests/testthat/test-getRandomVals.R
STEPCAM/tests/testthat/test-TernPlot.R
STEPCAM/tests/testthat/test-scaleSpeciesValues.R
STEPCAM/tests/testthat/test-strippeddbFD.R
STEPCAM/tests/testthat/test-calcSD.R
STEPCAM/tests/testthat/test-perturb.R
STEPCAM/tests/testthat/test-ABC_SMC.R
STEPCAM/tests/testthat/test-generateFrequencies.R
STEPCAM/tests/testthat/test-normalizeWeights.R
STEPCAM/tests/testthat/test-ordinationAxes.R
STEPCAM/NAMESPACE
STEPCAM/R
STEPCAM/R/Preparation.R STEPCAM/R/STEPCAM.R STEPCAM/R/ternPlot.R STEPCAM/R/modified_dbFD.R STEPCAM/R/generateArtificialData.R STEPCAM/R/ABC_SMC.R STEPCAM/R/main.R
STEPCAM/vignettes
STEPCAM/vignettes/STEPCAM_plotting.Rmd
STEPCAM/vignettes/STEPCAM.Rmd
STEPCAM/README.md
STEPCAM/MD5
STEPCAM/build
STEPCAM/build/vignette.rds
STEPCAM/DESCRIPTION
STEPCAM/man
STEPCAM/man/STEPCAM_ABC.Rd STEPCAM/man/plotSMC.Rd STEPCAM/man/STEPCAM-internal.Rd STEPCAM/man/generate.Artificial.Data.Rd STEPCAM/man/plotSTEPCAM.Rd STEPCAM/man/STEPCAM-package.Rd STEPCAM/man/TernPlot.Rd

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