Description Usage Arguments Author(s) Examples
This function plots the progression over the several iterations of the ABC-SMC algorithm. It can be used to explore results obtained with the STEPCAM-ABC function.
1 | plotSMC(path)
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path |
Working Directory |
Thijs Janzen
1 2 3 4 5 6 7 8 9 10 11 | ## Not run:
Artificial.Data <- generate.Artificial.Data(n_species = 40, n_traits = 3,
n_communities = 5, occurence_distribution = 0.2,
average_richness = 0.5, sd_richness = 0.2,
mechanism_random=FALSE)
O <- STEPCAM_ABC(Artificial.Data$abundances, Artificial.Data$traits,
numParticles = 10, n_traits = 3, plot_number = 1, stopRate = 0.8)
currentDir <- getwd();
plotSMC(paste(currentDir,"/",sep=""));
## End(Not run)
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Generating Particles for iteration 1
0--------25--------50--------75--------100
*********************** 4.8 8 6.2 accept rate = 1
Generating Particles for iteration 2
0--------25--------50--------75--------100
*********************** 5.3 7.6 6.1 accept rate = 1
Generating Particles for iteration 3
0--------25--------50--------75--------100
*********************** 6.5 7 5.5 accept rate = 1
Generating Particles for iteration 4
0--------25--------50--------75--------100
*********************** 6.5 6.3 6.2 accept rate = 1
Generating Particles for iteration 5
0--------25--------50--------75--------100
*********************** 6.5 5.8 6.7 accept rate = 0.7333333
Generating Particles for iteration 6
0--------25--------50--------75--------100
*********************** 2.3 13.4 3.3 accept rate = 0.44
Generating Particles for iteration 7
0--------25--------50--------75--------100
*********************** 3 14.8 1.2 accept rate = 0.5
Generating Particles for iteration 8
0--------25--------50--------75--------100
*********************** 4 14.5 0.5 accept rate = 0.2444444
Generating Particles for iteration 9
0--------25--------50--------75--------100
* 5.5 5.5 5.5 accept rate = 0
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