dsb_map: Data of the DsbMap for humans
In STRAH: Short Tandem Repeats Analysis of Hotspot Zones
Description
Usage
Format
References
See Also
Description
A dataset containing the PRDM9-A type hotspots of Pratto et al. 2014.
Usage
1
data (dsb_map)
Format
The data set contains 37527 rows and 27 columns. We provide information on the most important columns (column nr, column name) hereafter:
- 1, chrom
The chromosome under study
- 2, start
Start coordinates of the hotspot
- 3, end
End coordinates of the hotspot
- 4-8, (AA1,AA2,AB1,AB2,AC)_strength
Strength of the corresponding PRDM9-type hotspot.
- 9-15, (AA1,AA2,AB1,AB2,AC)_hotspots
Dummy coding whether these positions (start/end) define a hotspot of given PRDM9-type
References
Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841
Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).
See Also
STRAH documentation built on May 2, 2019, 11:03 a.m.
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Description Usage Format References See Also
Description
A dataset containing the PRDM9-A type hotspots of Pratto et al. 2014.
Usage
1 | data (dsb_map)
|
Format
The data set contains 37527 rows and 27 columns. We provide information on the most important columns (column nr, column name) hereafter:
- 1, chrom
The chromosome under study
- 2, start
Start coordinates of the hotspot
- 3, end
End coordinates of the hotspot
- 4-8, (AA1,AA2,AB1,AB2,AC)_strength
Strength of the corresponding PRDM9-type hotspot.
- 9-15, (AA1,AA2,AB1,AB2,AC)_hotspots
Dummy coding whether these positions (start/end) define a hotspot of given PRDM9-type
References
Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841
Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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