dsb_map: Data of the DsbMap for humans

Description Usage Format References See Also


A dataset containing the PRDM9-A type hotspots of Pratto et al. 2014.


data (dsb_map)


The data set contains 37527 rows and 27 columns. We provide information on the most important columns (column nr, column name) hereafter:

1, chrom

The chromosome under study

2, start

Start coordinates of the hotspot

3, end

End coordinates of the hotspot

4-8, (AA1,AA2,AB1,AB2,AC)_strength

Strength of the corresponding PRDM9-type hotspot.

9-15, (AA1,AA2,AB1,AB2,AC)_hotspots

Dummy coding whether these positions (start/end) define a hotspot of given PRDM9-type


Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841

Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).

See Also

STR_analysis, STR_detection

STRAH documentation built on May 2, 2019, 11:03 a.m.

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