Man pages for STraTUS
Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny
| build.edgelist | For a sample, produce the transmission tree as a 'igraph'... |
| draw.fully.sampled | For a sample with no unsampled hosts, draw the annotated... |
| draw.incompletely.sampled | For a sample with or without unsampled hosts, draw the... |
| grouping.map | A vector assigning the tips of 'stratus.example.tree' to... |
| sample.partial.tt | Resample the subtree rooted at any tree node, keeping the... |
| sample.tt | Sample one or more transmission trees uniformly |
| stratus.example.tree | An unexceptional phylogeny generated with 'rtree' from 'ape' |
| tt.generator | Enumerate transmission trees for the given pathogen... |
