|build.edgelist||For a sample, produce the transmission tree as a 'igraph'...|
|draw.fully.sampled||For a sample with no unsampled hosts, draw the annotated...|
|draw.incompletely.sampled||For a sample with or without unsampled hosts, draw the...|
|grouping.map||A vector assigning the tips of 'stratus.example.tree' to...|
|sample.partial.tt||Resample the subtree rooted at any tree node, keeping the...|
|sample.tt||Sample one or more transmission trees uniformly|
|stratus.example.tree||An unexceptional phylogeny generated with 'rtree' from 'ape'|
|tt.generator||Enumerate transmission trees for the given pathogen...|
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