build.edgelist: For a sample, produce the transmission tree as a 'igraph'...
In STraTUS: Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny

For a sample, produce the transmission tree as a igraph object

1	build.edgelist(generator, sample)

`generator`	A list of class `tt.generator` produced by `tt.generator`.
`sample`	A list of class `tt` produced by `sample.tt` or `sample.partial.tt`

An igraph object

1
2
3

generator <- tt.generator(stratus.example.tree)
samples <- sample.tt(generator, 1)
build.edgelist(generator, samples[[1]])

STraTUS documentation built on April 4, 2020, 5:07 p.m.

STraTUS index

rdrr.io home R language documentation Run R code online

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description