SWMPr: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Version 2.2.0

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System . These tools address common challenges associated with continuous time series data for environmental decision making.

Browse man pages Browse package API and functions Browse package files

AuthorMarcus W. Beck [aut, cre]
Date of publication2016-11-08 00:41:23
MaintainerMarcus W. Beck <mbafs2012@gmail.com>
LicenseCC0
Version2.2.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SWMPr")

Man pages

aggremetab: Aggregate metabolism data
aggreswmp: Aggregate swmpr data
all_params: Import current station records from the CDMO
all_params_dtrng: Get CDMO records within a date range
apacpnut: Example nutrient data for Apalachicola Bay Cat Point station.
apacpwq: Example water quality data for Apalachicola Bay Cat Point...
apadbwq: Example water quality data for Apalachicola Bay Dry Bar...
apaebmet: Example weather data for Apalachicola Bay East Bay station.
calckl: Calculate oxygen mass transfer coefficient
comb: Combine swmpr data
decomp: Simple trend decomposition
decomp_cj: Simple trend decomposition of monthly swmpr data
decompTs: Decompose a time series
ecometab: Ecosystem metabolism
gradcols: Get colors for plots
hist.swmpr: Plot swmpr using a histogram
import_local: Import local CDMO data
map_reserve: Map a reserve
metab_day: Identify metabolic days in a time series
na.approx.swmpr: Linearly interpolate gaps
overplot: Plot multiple SWMP time series on the same y-axis
oxySol: Dissolved oxygen at saturation
param_names: Get parameters of a given type
parser: Parse web results for swmpr
plot_metab: Plot ecosystem metabolism for a swmpr object
plot_summary: Plot graphical summaries of SWMP data
plot.swmpr: Plot swmpr data
plot_wind: Create a wind rose
qaqc: QAQC filtering for SWMP data
qaqcchk: Summary of QAQC flags in SWMP data
rem_reps: Remove replicates in nutrient data
setstep: Format a swmpr time vector
single_param: Get CDMO records for a single parameter
site_codes: Obtain metadata for all stations
site_codes_ind: Obtain metadata for a single reserve
smoother: Smooth swmpr data
stat_locs: Locations of NERRS sites
subset.swmpr: Subset a swmpr object
swmpr: Create a swmpr object
time_vec: Format SWMP datetimestamp

Functions

aggremetab Man page Source code
aggremetab.swmpr Man page Source code
aggreswmp Man page Source code
aggreswmp.swmpr Man page Source code
all_params Man page Source code
all_params_dtrng Man page Source code
apacpnut Man page
apacpwq Man page
apadbwq Man page
apaebmet Man page
calckl Man page Source code
comb Man page Source code
comb.default Man page Source code
comb.swmpr Man page Source code
decomp Man page Source code
decomp.default Man page Source code
decomp.swmpr Man page Source code
decompTs Man page Source code
decomp_cj Man page Source code
decomp_cj.default Man page Source code
decomp_cj.swmpr Man page Source code
ecometab Man page Source code
ecometab.default Man page Source code
ecometab.swmpr Man page Source code
gradcols Man page Source code
hist.swmpr Man page Source code
import_local Man page Source code
lines.swmpr Man page Source code
map_reserve Man page Source code
metab_day Man page Source code
metab_day.default Man page Source code
na.approx.swmpr Man page Source code
overplot Man page Source code
overplot.default Man page Source code
overplot.swmpr Man page Source code
oxySol Man page Source code
param_names Man page Source code
parser Man page Source code
plot.swmpr Man page Source code
plot_metab Man page Source code
plot_metab.swmpr Man page Source code
plot_summary Man page Source code
plot_summary.swmpr Man page Source code
plot_wind Man page Source code
plot_wind.swmpr Man page Source code
qaqc Man page Source code
qaqc.swmpr Man page Source code
qaqcchk Man page Source code
qaqcchk.swmpr Man page Source code
rem_reps Man page Source code
rem_reps.swmpr Man page Source code
setstep Man page Source code
setstep.default Man page Source code
setstep.swmpr Man page Source code
single_param Man page Source code
site_codes Man page Source code
site_codes_ind Man page Source code
smoother Man page Source code
smoother.default Man page Source code
smoother.swmpr Man page Source code
stat_locs Man page
subset.swmpr Man page Source code
swmpr Man page Source code
time_vec Man page Source code

Files

inst
inst/stat_locs.csv
NAMESPACE
NEWS.md
data
data/apaebmet.RData
data/apacpwq.RData
data/stat_locs.RData
data/apadbwq.RData
data/datalist
data/apacpnut.RData
R
R/globalVariables.R
R/swmpr_organize.R
R/swmpr_retrieval.R
R/gradcols.R
R/swmpr_analyze.R
R/swmpr_misc.R
MD5
DESCRIPTION
man
man/parser.Rd
man/na.approx.swmpr.Rd
man/aggremetab.Rd
man/apacpwq.Rd
man/oxySol.Rd
man/decompTs.Rd
man/site_codes.Rd
man/site_codes_ind.Rd
man/map_reserve.Rd
man/plot_summary.Rd
man/qaqc.Rd
man/plot.swmpr.Rd
man/ecometab.Rd
man/all_params.Rd
man/metab_day.Rd
man/overplot.Rd
man/aggreswmp.Rd
man/comb.Rd
man/single_param.Rd
man/plot_metab.Rd
man/rem_reps.Rd
man/all_params_dtrng.Rd
man/subset.swmpr.Rd
man/decomp.Rd
man/apaebmet.Rd
man/plot_wind.Rd
man/hist.swmpr.Rd
man/apacpnut.Rd
man/qaqcchk.Rd
man/calckl.Rd
man/import_local.Rd
man/apadbwq.Rd
man/param_names.Rd
man/setstep.Rd
man/decomp_cj.Rd
man/swmpr.Rd
man/stat_locs.Rd
man/smoother.Rd
man/gradcols.Rd
man/time_vec.Rd
SWMPr documentation built on May 19, 2017, 3:36 p.m.