SWMPr: Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System <http://cdmo.baruch.sc.edu/>. These tools address common challenges associated with continuous time series data for environmental decision making.

Author
Marcus W. Beck [aut, cre]
Date of publication
2016-11-08 00:41:23
Maintainer
Marcus W. Beck <mbafs2012@gmail.com>
License
CC0
Version
2.2.0

View on CRAN

Man pages

aggremetab
Aggregate metabolism data
aggreswmp
Aggregate swmpr data
all_params
Import current station records from the CDMO
all_params_dtrng
Get CDMO records within a date range
apacpnut
Example nutrient data for Apalachicola Bay Cat Point station.
apacpwq
Example water quality data for Apalachicola Bay Cat Point...
apadbwq
Example water quality data for Apalachicola Bay Dry Bar...
apaebmet
Example weather data for Apalachicola Bay East Bay station.
calckl
Calculate oxygen mass transfer coefficient
comb
Combine swmpr data
decomp
Simple trend decomposition
decomp_cj
Simple trend decomposition of monthly swmpr data
decompTs
Decompose a time series
ecometab
Ecosystem metabolism
gradcols
Get colors for plots
hist.swmpr
Plot swmpr using a histogram
import_local
Import local CDMO data
map_reserve
Map a reserve
metab_day
Identify metabolic days in a time series
na.approx.swmpr
Linearly interpolate gaps
overplot
Plot multiple SWMP time series on the same y-axis
oxySol
Dissolved oxygen at saturation
param_names
Get parameters of a given type
parser
Parse web results for swmpr
plot_metab
Plot ecosystem metabolism for a swmpr object
plot_summary
Plot graphical summaries of SWMP data
plot.swmpr
Plot swmpr data
plot_wind
Create a wind rose
qaqc
QAQC filtering for SWMP data
qaqcchk
Summary of QAQC flags in SWMP data
rem_reps
Remove replicates in nutrient data
setstep
Format a swmpr time vector
single_param
Get CDMO records for a single parameter
site_codes
Obtain metadata for all stations
site_codes_ind
Obtain metadata for a single reserve
smoother
Smooth swmpr data
stat_locs
Locations of NERRS sites
subset.swmpr
Subset a swmpr object
swmpr
Create a swmpr object
time_vec
Format SWMP datetimestamp

Files in this package

SWMPr
SWMPr/inst
SWMPr/inst/stat_locs.csv
SWMPr/NAMESPACE
SWMPr/NEWS.md
SWMPr/data
SWMPr/data/apaebmet.RData
SWMPr/data/apacpwq.RData
SWMPr/data/stat_locs.RData
SWMPr/data/apadbwq.RData
SWMPr/data/datalist
SWMPr/data/apacpnut.RData
SWMPr/R
SWMPr/R/globalVariables.R
SWMPr/R/swmpr_organize.R
SWMPr/R/swmpr_retrieval.R
SWMPr/R/gradcols.R
SWMPr/R/swmpr_analyze.R
SWMPr/R/swmpr_misc.R
SWMPr/MD5
SWMPr/DESCRIPTION
SWMPr/man
SWMPr/man/parser.Rd
SWMPr/man/na.approx.swmpr.Rd
SWMPr/man/aggremetab.Rd
SWMPr/man/apacpwq.Rd
SWMPr/man/oxySol.Rd
SWMPr/man/decompTs.Rd
SWMPr/man/site_codes.Rd
SWMPr/man/site_codes_ind.Rd
SWMPr/man/map_reserve.Rd
SWMPr/man/plot_summary.Rd
SWMPr/man/qaqc.Rd
SWMPr/man/plot.swmpr.Rd
SWMPr/man/ecometab.Rd
SWMPr/man/all_params.Rd
SWMPr/man/metab_day.Rd
SWMPr/man/overplot.Rd
SWMPr/man/aggreswmp.Rd
SWMPr/man/comb.Rd
SWMPr/man/single_param.Rd
SWMPr/man/plot_metab.Rd
SWMPr/man/rem_reps.Rd
SWMPr/man/all_params_dtrng.Rd
SWMPr/man/subset.swmpr.Rd
SWMPr/man/decomp.Rd
SWMPr/man/apaebmet.Rd
SWMPr/man/plot_wind.Rd
SWMPr/man/hist.swmpr.Rd
SWMPr/man/apacpnut.Rd
SWMPr/man/qaqcchk.Rd
SWMPr/man/calckl.Rd
SWMPr/man/import_local.Rd
SWMPr/man/apadbwq.Rd
SWMPr/man/param_names.Rd
SWMPr/man/setstep.Rd
SWMPr/man/decomp_cj.Rd
SWMPr/man/swmpr.Rd
SWMPr/man/stat_locs.Rd
SWMPr/man/smoother.Rd
SWMPr/man/gradcols.Rd
SWMPr/man/time_vec.Rd