getAllEBayes: Perform statistical test (mderated t-test), comparing all...

Description Usage Arguments Details Value Note References See Also Examples

View source: R/ExpressionAnalysis.R

Description

Perform statistical test (mderated t-test), comparing all case to control

Usage

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getAllEBayes(eset = eset, adjust = F, log = T, method = "pairwise",
  adjustFilter = matrix(F, nrow = nrow(eset), ncol =
  length(levels(pData(eset)$condition)) - 1))

Arguments

eset

ExpressionSet

adjust

TRUE/FALSE adjust for multiple testing using Benjamini & Hochberg (1995) method

log

T/F log-transform expression values

method

c("all","pairwise")

adjustFilter

matrix T/F do not adjust for multiple testing

Details

No details

Value

ExpressionSet object

Note

No note

References

Empirical Bayes method, Smyth (2004), http://www.ncbi.nlm.nih.gov/pubmed/16646809

See Also

eBayes

Examples

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print("No examples")

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