Man pages for SeedMatchR
Find Matches to Canonical SiRNA Seeds in Genomic Features
| check_gene_list_overlap | Check if input gene lists overlap |
| deseq_fc_ecdf | Plot the ECDF for DESeq2 log2(Fold Changes) |
| download_parse_file | Download and parse DESeq2 output from GSE184929 |
| ecdf_stat_test | Test for differences in log2(Fold Change) ECDFs between two... |
| filter_deseq | Filter DESEQ2 Results for SeedMatchR |
| get_example_data | Download example DESeq2 data from GEO |
| get_feature_seqs | Get transcripts features and feature sequences |
| get_seed | Get the target seed sequence given a canonical seed name and... |
| load_example_data | Load example DESeq2 data into the environment |
| load_species_anno_db | Load species specific 'AnnotationDb' |
| plot_seeds | Plot the Guide Strand with different optional seeds |
| SeedMatchR | Find seed matches in genomic features |
| SeedMatchR-package | SeedMatchR: Find Matches to Canonical SiRNA Seeds in Genomic... |
