plot_seeds: Plot the Guide Strand with different optional seeds

In SeedMatchR: Find Matches to Canonical SiRNA Seeds in Genomic Features

Plot the Guide Strand with different optional seeds

Description

Plot the Guide Strand with different optional seeds

Usage

plot_seeds(guide.seq)

Arguments

guide.seq

Guide a.k.a anti-sense sequence oriented 5' > 3'. Sequence must be greater than 8 bp.

Value

A msaggplot of the guide sequence in addition to the available seed sequences

Examples

library(msa)

# Ttr siRNA sequence
guide.seq = "UUAUAGAGCAAGAACACUGUUUU"

# generate seed plot
plotted.seeds = plot_seeds(guide.seq)

SeedMatchR documentation built on Oct. 25, 2023, 1:08 a.m.