plot_selectboost_cascade | R Documentation |
Plot result of Selectboost for Cascade inference.
## S4 method for signature 'network.confidence,ANY' plot(x, col = gray((1:99)/100, alpha = NULL), ...)
x |
A |
col |
Colors for the plot. |
... |
Additionnal arguments passed to the heatmap function. |
Extending results from the Cascade package: providing confidence indices for the reverse engineered links.
Reference for the Cascade modelling Vallat, L., Kemper, C. a., Jung, N., Maumy-Bertrand, M., Bertrand, F., Meyer, N., Pocheville, A., Fisher, J. W., Gribben, J. G. et Bahram, S. (2013). Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences of the United States of America, 110(2), 459-64.
Reference for the Cascade package Jung, N., Bertrand, F., Bahram, S., Vallat, L. et Maumy-Bertrand, M. (2014). Cascade : A R package to study, predict and simulate the diffusion of a signal through a temporal gene network. Bioinformatics. ISSN 13674803..
Nothing.
Frederic Bertrand, frederic.bertrand@utt.fr
selectBoost: a general algorithm to enhance the performance of variable selection methods in correlated datasets, Frédéric Bertrand, Ismaïl Aouadi, Nicolas Jung, Raphael Carapito, Laurent Vallat, Seiamak Bahram, Myriam Maumy-Bertrand, Bioinformatics, 2020. doi: 10.1093/bioinformatics/btaa855
boost
, fastboost
, selectboost
, inference
Other Selectboost functions:
autoboost()
,
boost
,
fastboost()
,
selectboost_cascade
data(net_confidences) plot(net_confidence) plot(net_confidence_.5) plot(net_confidence_thr)
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