SeqMADE: Network Module-Based Model in the Differential Expression Analysis for RNA-Seq

A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.

Author
Mingli Lei, Jia Xu, Li-Ching Huang, Lily Wang, Jing Li
Date of publication
2016-06-27 06:59:54
Maintainer
Mingli Lei<leimingli2013@sjtu.edu.cn>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

exprs
Gene Expression Dataset
Factor
Construction of Variable Factors
moduleMatrix
Modulematrix Construction
nbGLM
Identify Differential Expression Modules Based on the...
nbGLMdir
Identify Differential Expression Modules Based on the GLM...
nbGLMdirperm
Identify Differential Expression Modules Based on the GLM...
networkModule
NetworkModule
SeqMADE-package
Network Module-Based Model in the Differential Expression...

Files in this package

SeqMADE
SeqMADE/NAMESPACE
SeqMADE/data
SeqMADE/data/networkModule.txt.gz
SeqMADE/data/exprs.txt.gz
SeqMADE/R
SeqMADE/R/SeqMADE.r
SeqMADE/MD5
SeqMADE/DESCRIPTION
SeqMADE/man
SeqMADE/man/moduleMatrix.Rd
SeqMADE/man/nbGLM.Rd
SeqMADE/man/nbGLMdirperm.Rd
SeqMADE/man/nbGLMdir.Rd
SeqMADE/man/SeqMADE-package.Rd
SeqMADE/man/Factor.Rd
SeqMADE/man/networkModule.Rd
SeqMADE/man/exprs.Rd