SeqMADE: Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
Version 1.0

A network module-based generalized linear model for differential expression analysis with the count-based sequence data from RNA-Seq.

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AuthorMingli Lei, Jia Xu, Li-Ching Huang, Lily Wang, Jing Li
Date of publication2016-06-27 06:59:54
MaintainerMingli Lei<leimingli2013@sjtu.edu.cn>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SeqMADE")

Man pages

exprs: Gene Expression Dataset
Factor: Construction of Variable Factors
moduleMatrix: Modulematrix Construction
nbGLM: Identify Differential Expression Modules Based on the...
nbGLMdir: Identify Differential Expression Modules Based on the GLM...
nbGLMdirperm: Identify Differential Expression Modules Based on the GLM...
networkModule: NetworkModule
SeqMADE-package: Network Module-Based Model in the Differential Expression...

Functions

Factor Man page Source code
SeqMADE Man page
SeqMADE-package Man page
exprs Man page
moduleMatrix Man page
nbGLM Man page
nbGLMdir Man page
nbGLMdirperm Man page
networkModule Man page

Files

NAMESPACE
data
data/networkModule.txt.gz
data/exprs.txt.gz
R
R/SeqMADE.r
MD5
DESCRIPTION
man
man/moduleMatrix.Rd
man/nbGLM.Rd
man/nbGLMdirperm.Rd
man/nbGLMdir.Rd
man/SeqMADE-package.Rd
man/Factor.Rd
man/networkModule.Rd
man/exprs.Rd
SeqMADE documentation built on May 19, 2017, 11:01 a.m.